G83645


Basic Information

Item Value
gene id G83645
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 3935696 ~ 3935955 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU104360
gtacaaattgctcctgagcctcaagtagtatattcttaaaatatacccatccattttcaactgactctgtatccagtgtgctccagtctacctcttctaagtgccgtctcataccttcaaggtttgcttttctaaaattgtagaccattgttttagacttggaccttgttttttgaaagaatgcctcaaagctaaccatattgtgatcacaatttgccattggttctctaactactgtccccctgactctatcttggtca

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU104360 True 260 lncRNA 0.39 1 3935696 3935955

Neighbor

gene id symbol gene type direction distance location
AMCG00021112 gpr50,LOC104936099,LOC108436701 coding upstream 20052 3906153 ~ 3915644 (+)
AMCG00021107 NA coding upstream 91407 3841600 ~ 3844289 (+)
AMCG00021108 nono coding upstream 126681 3804211 ~ 3809015 (+)
AMCG00021101 NA coding upstream 162388 3762081 ~ 3773308 (+)
AMCG00021106 NA coding upstream 174806 3758599 ~ 3760890 (+)
AMCG00021124 NA coding downstream 803186 4739141 ~ 4751627 (+)
AMCG00021123 NA coding downstream 816224 4752179 ~ 4760646 (+)
AMCG00021126 tsc22d3,zgc:64189,LOC107757743,LOC107666597,LOC107561288,LOC107562102 coding downstream 908796 4844751 ~ 4848172 (+)
AMCG00021127 tsc22d3,LOC108246678,LOC105928685,LOC107377168 coding downstream 955294 4891249 ~ 4894563 (+)
AMCG00021128 pcdh11,LOC107741043,LOC107661995,LOC108417465 coding downstream 1833212 5769167 ~ 5787583 (+)
G83623 NA non-coding upstream 140085 3795344 ~ 3795611 (+)
G83622 NA non-coding upstream 140454 3794989 ~ 3795242 (+)
G83621 NA non-coding upstream 146450 3789027 ~ 3789246 (+)
G83528 NA non-coding upstream 581410 3353985 ~ 3354286 (+)
G83516 NA non-coding upstream 847787 3087694 ~ 3087909 (+)
G83704 NA non-coding downstream 326046 4262001 ~ 4265982 (+)
G83710 NA non-coding downstream 344153 4280108 ~ 4286600 (+)
G83716 NA non-coding downstream 356171 4292126 ~ 4292364 (+)
G83741 NA non-coding downstream 698781 4634736 ~ 4730944 (+)
G83752 NA non-coding downstream 882142 4818097 ~ 4818329 (+)
G83624 NA other upstream 136913 3797841 ~ 3798783 (+)
AMCG00021076 NA other upstream 1705549 2209482 ~ 2230147 (+)
AMCG00021063 NA other upstream 2016330 1917488 ~ 1919366 (+)
AMCG00021049 NA other upstream 3009221 918006 ~ 926475 (+)
AMCG00021113 vma21,LOC107565438,LOC107741184,LOC107680358,LOC108442053 other downstream 191115 4127070 ~ 4129373 (+)
AMCG00021114 NA other downstream 266756 4202711 ~ 4233797 (+)
AMCG00021133 NA other downstream 2608279 6544234 ~ 6546601 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other downstream 3176042 7111997 ~ 7121237 (+)
AMCG00021180 NA other downstream 4104215 8040170 ~ 8043299 (+)

Expression


Co-expression Network