G83710


Basic Information

Item Value
gene id G83710
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 4280108 ~ 4286600 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU104432
aggttggaacaaaaaccagcagggcaggggggactccaggaccagtttgaaaacccctgccaTAGATTGTCCACCTGCAGTGCCTTTTTTTCTGTGACATCCATAAACATTGAATGGACCTggactccaggacaggtttggaAAGCACTGATGTAGATTATGTAACATTCATAACCTgtaacagaagaagaaaaaaggcaataaaAGGAAACTGACTGGTGTAGAAATTGCATTGTGTTAAACGCTCACTTACCCAATATTGTCACTTTATAATAGTATCCTTCATCATCAACAGCTGAATACTGGGGACCATCCTGTTCTCCCAGGAACACGTCGGGCTCCCACTGGGATGGGTGGAAACTGTTGCGTTGCATCATGACATCTTTATGTTCATAGTCAAACTTCTGAGGAACGCTCTCTCTGTGCAGAGGGCCAAACCTGAAATGCTCCACCAGCTGCCCCTTCAATGAAGGCCAAATACCGGATTCCCACAGAGAACTGGGGACGTCCCCGAGACTCGGCCCTTCAGGTGAGTGACTGCCTGCGAGGGGATCTAGGTCACAATAATGTCCACACAAATGCCTAAAACACAGATCTACTGAACACATCAACAGAGAGTccactactgtactgtagttgTGACCTGCATTTTGCATGACTTGTTCTAGcctgtatttcagtaaataacaaaataagtcCCCTATTGAGCAATAATCGGCAATCACCCCATTGTGATGCtttaataatgacaaaaacTCACTCCAACGACCAGCAGGTTGAATAACACAACAGTGCTTATGCCCAACAACCATTTACTCACGTTCTTTTAGTATTTGCttgtattcagtattatttctgagaatgtaaatataaagtatttacatatattaatttaccAGGAGTATCTTCTTATTgagtttctttattattatttgggttAGTTTAACTCCAGGAACAGCTAGAGAAGAACATGTGAAGAGGAAGTCTCGCACAGCACATcaaaaaatgtgacatcagGAGGCAAATATTTTATACAACTCACAGAAAAACACTGTCACGGTTAAACCAACAAACAGTTTATTATAGTTAATTGCGGTCTGTGGCCCTTGTCCCGCTGAGCAATACCATGACTAGGCTATTTCTTATTCTGCATTTCTCTGGTAAGATTTATGGCTCTACGATAGCGATGATGCCGGCAATTAAACGGTTATGCAAAGCGCTCTTTCACAACTTGAACTGTGTGTCAATGACTCTCCAGCCAATGAGTAACTAAAGCCCAGCGACACACGACACCCAGAGGAGCGGaaggttttattacatttccacGGTCAGTTAACAATTACCAGGACTGATCTCTTTGCACATTTTCCCACAAGTTATGGATTGCGTACTCATGTTGTGCTGTTTTGCCCTCGTTAGCAGGGTGTTCAGTGACTGTGTGGAGATGAGGGCATACCTGTCCTGGGCATCTCTGCATCGTCCTCTGGCGTCTCTCTGTCCTCCTCAGCCTCGGAGTCGGAACTCGTCCCTTCCTGCTGGTCCTCGTCTATCTGGCTTCCTCCTTGTGCTTCTCTGtttcacacaaacacgcacTACGGTTACACTACAATTAACCCCTTCCTGGTTCAGCAGCAGCTTCAAACAGCAGAGTATCTGGAGACGCACTTCACTGGGCACGTGCTGGAGAATATCAATCTCATCTCCGCATTAATAACCATAACCTCAGATTAGGTTTACCTGCGTGCCTGAGCAGCCGCCCGGGTGAGATAGCGCCGCTTGGCCACTctgaaatcaaaacacaagacaCTGTCTCACTATCACGTTGTGTTATTTTATCACCAGCAGATTGTGCAGGACAGGTAGATCTTTATGAGCGCATCATGACTGTGCCCATATTGCCTCTTGTGCGGGCCTCGTGTGCGTTTGTGTGCCACGTCAGCCCTGGACGGGTCGCCGCTCTTGCCGCCCTGTCCAGACGAGTCCAACTCCTTCAGAGAGACTCCTCGGGTCTCAGATCGACAGCTGCGGCGCTCGGTCTCGGGTGCTCCGGCTGGCTGGGCCCTGTGTGCCGGACTCTGGGCACTGGGACTCACTGGTTCTGGCGAGGTTGTGGTAGCAGCTGGAGCCTGAGCCAGACAGAATGAAGCATTGAGGAGCAACATCCTTTCGCTAATGGCTCACAGAGCTTTGGTACAGGTGAAatcaggtttattttattgcttattCAAGAAACAGAAGTCTTAGGGCTATTGCTTCCCTGTACTATCGctaaaaacatcacaatacAATCAGAGTTGTCTCCTTTTGGTTCTATACAGTTTATAAAACGCTGCTCAGAATTAACTATTTAAATTCCTCAGGCAAAGGCGTTAGGTGGGCTGCTCTGGTTTTCGGAGCTGCTGCCACTGACCTGCCCCGCTGTGTGGCCCGGCCCAGACTCCTCCCCAGGCCCCGACACATACTGCACTGCCGTGATTAGCCCCTGCACCGCCAGACGCTTGTGCTCCCGGTAATGCAGCGTCTCGATCTCCCTCTCCAGCTCCTTGGTCGCTATCATGGGAATCGGAGCTGGAATGAAGCACAAACATAGTCTCAGCTCGGcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104432 True 2604 lncRNA 0.48 3 4280108 4286600

Neighbor

gene id symbol gene type direction distance location
AMCG00021112 gpr50,LOC104936099,LOC108436701 coding upstream 364464 3906153 ~ 3915644 (+)
AMCG00021107 NA coding upstream 435819 3841600 ~ 3844289 (+)
AMCG00021108 nono coding upstream 471093 3804211 ~ 3809015 (+)
AMCG00021101 NA coding upstream 506800 3762081 ~ 3773308 (+)
AMCG00021106 NA coding upstream 519218 3758599 ~ 3760890 (+)
AMCG00021124 NA coding downstream 452541 4739141 ~ 4751627 (+)
AMCG00021123 NA coding downstream 465579 4752179 ~ 4760646 (+)
AMCG00021126 tsc22d3,zgc:64189,LOC107757743,LOC107666597,LOC107561288,LOC107562102 coding downstream 558151 4844751 ~ 4848172 (+)
AMCG00021127 tsc22d3,LOC108246678,LOC105928685,LOC107377168 coding downstream 604649 4891249 ~ 4894563 (+)
AMCG00021128 pcdh11,LOC107741043,LOC107661995,LOC108417465 coding downstream 1482567 5769167 ~ 5787583 (+)
G83704 NA non-coding upstream 14126 4262001 ~ 4265982 (+)
G83645 NA non-coding upstream 344153 3935696 ~ 3935955 (+)
G83623 NA non-coding upstream 484497 3795344 ~ 3795611 (+)
G83622 NA non-coding upstream 484866 3794989 ~ 3795242 (+)
G83621 NA non-coding upstream 490862 3789027 ~ 3789246 (+)
G83716 NA non-coding downstream 5526 4292126 ~ 4292364 (+)
G83741 NA non-coding downstream 348136 4634736 ~ 4730944 (+)
G83752 NA non-coding downstream 531497 4818097 ~ 4818329 (+)
G83900 NA non-coding downstream 2356582 6643182 ~ 6643523 (+)
G83904 NA non-coding downstream 2374129 6660729 ~ 6662819 (+)
AMCG00021114 NA other upstream 46311 4202711 ~ 4233797 (+)
AMCG00021113 vma21,LOC107565438,LOC107741184,LOC107680358,LOC108442053 other upstream 150735 4127070 ~ 4129373 (+)
G83624 NA other upstream 481325 3797841 ~ 3798783 (+)
AMCG00021076 NA other upstream 2049961 2209482 ~ 2230147 (+)
AMCG00021063 NA other upstream 2360742 1917488 ~ 1919366 (+)
AMCG00021133 NA other downstream 2257634 6544234 ~ 6546601 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other downstream 2825397 7111997 ~ 7121237 (+)
AMCG00021180 NA other downstream 3753570 8040170 ~ 8043299 (+)
G84301 NA other downstream 4345127 8631727 ~ 8633410 (+)
G84425 NA other downstream 5129667 9416267 ~ 9423419 (+)

Expression


Co-expression Network