G83741


Basic Information

Item Value
gene id G83741
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 4634736 ~ 4730944 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU104481
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagatagccACACTATCTTTGAATAGATCTTGCCCCGTTcaagaattaaaaaagtaatgttaCAGACTTGTACTCCATTAAATtagtcaaattatttaatatcacTCTAGCAGATACATACAGATCTCTGACTATCTGATTGAAAGCAAGATTTGTAATGAACATAATTCATGTTAAGATTAAAAATTTACTGCTCAAGTGCcttcaaaaacaatatgtaattatcAAATGTAGGAACCTCAGAGTAGCAGGCTAACATTCAGGACTCCCGGATGTTATTACAATAAGTGTAAATCGAATACAGAGcaggaatttaattaaacttgtttacattaaagtatttttcaaaacagttcAGATAATACAGGAAGAATGGAAGGAGGTCCATCTATTAGATTGATATTTGATTTCTAATATGATCTCGTGCATATTCAGCAACTTCCAAATATCCAGAGCATTTTCCTGATGAATGGAACTCCCTCCACTGTCTACAACATTGAGGCCTCAACGCTGCAAAGCTGTAACcctgtgtgtgcgagtgtggtAAGTTTACTAGAGTACAGTATAGTGTGTACTGAAGCTATGTGATTAATAAACATGAGCAATGAAAGGAATATTTGAGCTGAAATGCTTTTCATCATATACAGAAAAAAtgacatttggaaaaataatatactgtGTTCTAAATTATAACAGCATTAAACCAGTGTCAATGTCCAAGACTGGAAAACTGGGTAAAATTGCTTTACTTTATCAGAAAACGTACACTCTAGAAatgattttggttttatatatagatagatatgtaattaaaagcaaggtttgttttcagttgtataGTAGAAACtattgcattacaaaagtgtGTATTTACAGTAACCACAGTTTGCTGTTTTCTAAAACCCCAAATAAATATCCAATAGTCCCTATGACAAAGCTTCCCTAGGGCTCAGCCGAACAACGCAACTGTTGTATGAAGACTATGACATAATCAAGAGTCAATAAtcaaagaggagaaaaaaaatatatatatatagaagataATCCTATTGTTCAATTATTTCATTCTCCATAATTTAAAtaccacatataaaaaaaactcgAAATAGCAAAATATTGTCTGAAATGGCAGGTTCATGTATTTGCAGTGTTGTTTGCTCTAGTGGAGCTGGCTAGTAAAATAAGGATACCAGCGTTAGAAAGggaaatactttttaaaataatattttaaagtttaaatccacacaacaaaaaatacgACAACAAACTAAACCTTATGATATGTTAGTCTTTATCTTGACTCAAGTTCAAGATTCCTGAtgggaaatacatttacagtaatgtaCAGCTTACATCGAGCATAGTGTTCAGGCAGAGTCGTTGCTTCTACAGACACAGCAAGTCAACTGCACTCAGTGGAGtggattcacaaaataaatgtcctttaaatctctttcacaatttaaaaaacaaaaaggacacCCTCTATATTTCTCTCTTCATTAACACAAGCACTGTCCAATTAAAGCAATAAGCCTCATTCTGCCCATTCCTATAAACCAAGAATTAAACTCCTTGAAGATAGGATTCACTGCCTAGAAAAGTAAAggtttacaaagaaaataaacaaaaacccaataataaaattgaaatgaataGTTCATTATTCAGGTAGAAATTATAACCATGTTATTTACTCCCTTGTTTAACAGCTCCAAactaatacagtaaatacacaatCTGTTTCAAAAGCAATAGTATTTACAACAGAACTTTACATaaaaatttaacatttttaattttattcaacaCAAAACTGCTATGACCTACTAAAAAAGTCTGAACTTCAGTGTCCCCTCGAAGCCTCGTACTGCACACTGGTCCGACAGACAGACGTCAGGTCAACACATTGTAATTTTCTTAGTTCTGTCTGTAATATCTGAATGTTTCAAAAGCATGATAGTGTTTTACTTTTAGTgctatatttacatatttcatcCTTTAGGTCTGAAGTAAAACTCCCGTAGGGTcagttgtgttatttttaaagcacatgagataagaaaataaatatcttacaTAATAAACAAGTGCTTTATTTACATCAAAAAGTAAGGTGCTCTCCATTTAAAGATGACTAACCTCCTTatgttacatttgaaaatatcccACTTTATGAAGGTCAAAGCTTAGTTGCATAGGTAGTTGTGTGCAAGCTGTAAACACAGTGGCGCCACTAGGATTCAGAGCATGTCTGCTTCATCTGGGACTCATTCCGAGATCTTTCAGAAAACTCATGTCATGTTTGCAAAGCGAACGTCTGTGGCACTTTCTCCACATGCAACAAGCGGAGGCTCCGAGGGAACACTGAGGGATTCACTCGGGTCACATCAAGACGTCCACGTCGCCCTCATGGTCCTCCTCCGTGACTTTGAGCGACAGCACCTCCTCGTTGAGGAAGAGGCCGCTCAGCCTCTCCTTGCGCGCCTGTCTCTGCTCCTTCAGCTGCCTCTTGCGCAGAGCCTTCTGCTGCAGCTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104481 True 2574 lncRNA 0.35 2 4634736 4730944

Neighbor

gene id symbol gene type direction distance location
AMCG00021112 gpr50,LOC104936099,LOC108436701 coding upstream 719092 3906153 ~ 3915644 (+)
AMCG00021107 NA coding upstream 790447 3841600 ~ 3844289 (+)
AMCG00021108 nono coding upstream 825721 3804211 ~ 3809015 (+)
AMCG00021101 NA coding upstream 861428 3762081 ~ 3773308 (+)
AMCG00021106 NA coding upstream 873846 3758599 ~ 3760890 (+)
AMCG00021124 NA coding downstream 8197 4739141 ~ 4751627 (+)
AMCG00021123 NA coding downstream 21235 4752179 ~ 4760646 (+)
AMCG00021126 tsc22d3,zgc:64189,LOC107757743,LOC107666597,LOC107561288,LOC107562102 coding downstream 113807 4844751 ~ 4848172 (+)
AMCG00021127 tsc22d3,LOC108246678,LOC105928685,LOC107377168 coding downstream 160305 4891249 ~ 4894563 (+)
AMCG00021128 pcdh11,LOC107741043,LOC107661995,LOC108417465 coding downstream 1038223 5769167 ~ 5787583 (+)
G83716 NA non-coding upstream 342372 4292126 ~ 4292364 (+)
G83710 NA non-coding upstream 348136 4280108 ~ 4286600 (+)
G83704 NA non-coding upstream 368754 4262001 ~ 4265982 (+)
G83645 NA non-coding upstream 698781 3935696 ~ 3935955 (+)
G83623 NA non-coding upstream 839125 3795344 ~ 3795611 (+)
G83752 NA non-coding downstream 87153 4818097 ~ 4818329 (+)
G83900 NA non-coding downstream 1912238 6643182 ~ 6643523 (+)
G83904 NA non-coding downstream 1929785 6660729 ~ 6662819 (+)
G83914 NA non-coding downstream 1948259 6679203 ~ 6681917 (+)
G83976 NA non-coding downstream 2320253 7051197 ~ 7056132 (+)
AMCG00021114 NA other upstream 400939 4202711 ~ 4233797 (+)
AMCG00021113 vma21,LOC107565438,LOC107741184,LOC107680358,LOC108442053 other upstream 505363 4127070 ~ 4129373 (+)
G83624 NA other upstream 835953 3797841 ~ 3798783 (+)
AMCG00021076 NA other upstream 2404589 2209482 ~ 2230147 (+)
AMCG00021063 NA other upstream 2715370 1917488 ~ 1919366 (+)
AMCG00021133 NA other downstream 1813290 6544234 ~ 6546601 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other downstream 2381053 7111997 ~ 7121237 (+)
AMCG00021180 NA other downstream 3309226 8040170 ~ 8043299 (+)
G84301 NA other downstream 3900783 8631727 ~ 8633410 (+)
G84425 NA other downstream 4685323 9416267 ~ 9423419 (+)

Expression


Co-expression Network