G84089 (LOC107575789)


Basic Information

Item Value
gene id G84089
gene name LOC107575789
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 7511561 ~ 7511989 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU104901
ctatcaatcagcaagatttctggctcccaggtgtcttttatacaggtaaagattgtagacctacacaaggctggaatgggctacaagaccatcgccaagcagcttggtgagaaggtgacaacagttggtgcgattattcgcaaatggaagaaacacaaaataactgtcagtctccctcggtctggggctccatgcaagatctcacctcatggagtttcaatgatcatgagaacggtgaggaatcagcccagaactacaccggaggatcttgt

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase zeta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104901 True 272 lncRNA 0.47 2 7511561 7511989

Neighbor

gene id symbol gene type direction distance location
AMCG00021166 tmlhe,LOC106563395,LOC107715863,LOC107562156 coding downstream 19647 7482573 ~ 7491914 (-)
AMCG00021162 dkc1,LOC102780436 coding downstream 31775 7469757 ~ 7479786 (-)
AMCG00021161 NA coding downstream 70534 7440032 ~ 7441027 (-)
AMCG00021157 NA coding downstream 186109 7223466 ~ 7325452 (-)
AMCG00021156 LOC102292396,LOC102784372 coding downstream 288712 7205421 ~ 7222849 (-)
AMCG00021169 LOC107669001,LOC107691958,LOC107562838,LOC107742332,LOC107588216 coding upstream 303139 7815128 ~ 7816111 (-)
AMCG00021173 NA coding upstream 394169 7906158 ~ 7914299 (-)
AMCG00021175 clcn5a,LOC107715429,LOC106563682,LOC107557080,LOC107733513,LOC107673797 coding upstream 441083 7953072 ~ 7976121 (-)
AMCG00021176 shroom4,LOC107588210 coding upstream 470411 7982400 ~ 8024402 (-)
AMCG00021188 LOC107707922,LOC101154659,LOC108412583,LOC101071205 coding upstream 752960 8264949 ~ 8275630 (-)
G84081 NA non-coding downstream 42133 7462728 ~ 7469428 (-)
G84053 NA non-coding downstream 119128 7391064 ~ 7392433 (-)
G84052 gabrb4,LOC108429394,LOC103032374,LOC107727281,LOC107571379 non-coding downstream 120646 7390622 ~ 7390915 (-)
G83931 NA non-coding downstream 698127 6812232 ~ 6813434 (-)
G83901 NA non-coding downstream 868038 6643222 ~ 6643523 (-)
G84093 NA non-coding upstream 41631 7553620 ~ 7644000 (-)
G84108 NA non-coding upstream 289140 7801129 ~ 7805537 (-)
G84132 NA non-coding upstream 412032 7924021 ~ 7931516 (-)
G84156 NA non-coding upstream 466261 7978250 ~ 7979823 (-)
G84184 NA non-coding upstream 552542 8064531 ~ 8116827 (-)
AMCG00021153 NA other downstream 389070 7115420 ~ 7122491 (-)
G83864 NA other downstream 964984 6544492 ~ 6546577 (-)
G83761 NA other downstream 2760326 4703255 ~ 4751235 (-)
AMCG00021090 NA other downstream 4792642 2677585 ~ 2718919 (-)
G83428 NA other downstream 5052182 2457001 ~ 2459379 (-)
AMCG00021249 NA other upstream 4581488 12093477 ~ 12100854 (-)
G84814 NA other upstream 5015104 12527093 ~ 12527694 (-)
AMCG00021259 diaph2 other upstream 5207875 12719864 ~ 12801586 (-)
G84952 NA other upstream 6115346 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 6357950 13869939 ~ 13917868 (-)

Expression


Co-expression Network