G84184


Basic Information

Item Value
gene id G84184
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8064531 ~ 8116827 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU105031
TTCCCCAAGAGGCATGCCgagaatgtattttatatacacaaacatacatacacacactcagtacatacataaatccaaagatggacaaaacaGCTATACAGGATTCCAAGAGacaaaaaaagacctagaagaccacataaaagatgggaagatgaaatagattgactggtgtgacctggatgagacactacattaaaataaagggaTGTATCTTGTGAAGGTCTTCGtctagcagtggatcgataaaaACTGCTGATGCACGTTtacatgcatgtttatttttaaagatagcGAATAATAAAGAGAATGAAGGCGTTTCAAATGACTCATCTGAATGAAGTTGCAGTGAGCTCAGAACACAGGCCGAGCGCGGTGCACGGCCCGGGCGGTTTGAACACCAGGCTGTGCATCAGACTTACTGTAGCCAGGAGTTCAGTAGGAATGTTTATGACTGAACACGGTTTGGAGTTAGCTCCCAATAATCACTAATCAGGTATTTGCTTTTGCCATTTGAATTCTGGTATGTTTACCAGTCAACATCAATTCTGACTGCAGAATTAGCTTTCTTACAGTACTATAATTATGAACAGACGGCCAGTAGAACCAGGCAGAATGCTTGGCACCAGTAAAAAAGACTTGCAGACAAGCCTATATATTAGACAGGGGTTGATATTGGCAGGAGAACATTGGATTCATTTTAGAGACTCATGCTCTAGAAAAACATCTGTTTCTAGCTTTGAATCTCAAATGTCCAGCATATGTAAACGTATGCAGTCTGCAGTGGCAAAAGCAGCTTGTTCTggagttattttgttttaaactgaatgCTACTTGGTTATGAAACATTTGGACAGCAGTATctcaaacactaacacacatttaatcaatttaacattttgtgaCAACTTTTTGGACTTGATGCATCTTATGAATTGAAGGATGAAGTCAAGCAGAAACCAGTTTTACTCTGAAGGTCATATTATAGAACAGGACAATGGAGAACTCTGCAACAGTGCCACCTGCTGCAGACAGAGGGGGCAGCACACAGATCCCTCCCTTAAATAAAGCTGGACCATGAAACTATGATTGTAGTGACAATTCAAATCGGTAGAATTAAAAATTCTGGTTTGTTTTCAAGCTGTTCAATTCTGTTAAGCAATTAAAAGGGTTTTAACATCACAGAATGGAAATATGGCTGTGACTTTAAAATCATGAGTCAATTACAGCACTATGTCCCTCCCATGGGTAACttcccccagcccccccccaccaattAATGTGATCAGAGTAATGGATTTAGGCTAAGGGGTCTTCACCTTCAAAAAAGGACATGCATGTCTGCATTACTTACTGTCCAACTCAAGACATTGGAAGGAACAGCCTAGACATAAAGCGAGAACTTTAGTGACAACAAGACCATCCGTTTCTGTAAATAACCTTTTATTTGAAATCAGGGTGTTCTGCGGTTTGTACAGGGCTGCCAGTCAATAGCATTTAGTTGCTGCCCTGCTTGGCTGCCAGTCTCTTGTCTCTCTCCTCGGCAATGGTGAGGCGGATACCCTTTCCGCGGGGCAGGGAGACCCATGGCTTGTtaccctttaaaaaataaaaaggaagttTTAAATAAAGTCTCAAGAATATCACATTCATATTGAGACAGTGAAAATATAAGGACAGATTTCATCCAGCAATGGTAAGGTCAATCTGGGCTTTTAGTCTAGCCCAGAAAGGCAAAATGTTAAGAATCAATGGACTACCTGCCCTTGCCAAGAGCATTAAATGTGGAAGTCACTTGACTGAACAACACTTTCTAGAACAAACAGCTTCCTAGCACTCAATGCAACAGACAAGCTTAGTTTATCACTTGAACCAGAGTTTACGAAGACTCTGAAAAAACGTTTAGCACAGATTTCCAATCAACATTTGAAATTCATTAAATTCGGTAGCCCATACCTTGCCGATCACAAAAATGTTGGACAGCCTGGTGGCGAAGCTGTTGCCAGTGCTGTCCTTGACGTGCACCACATCAAAAGACCCAGGGTGTCTCTCCCGGTTGGTGATCACACCAATTCTGCCCAAGTTAGCACCACCAGTCACCATACACAGGTTACCGTGTCAAACTTGATGAACTCTGTGATTTTGCCAGTCTCCAAGTCAATCCTGACGGTGTCGTTCACCTTGATGAGGGGGTCGGGGTACCGGATGGTGCGAGCATCGTGGGTCACTAAGTGGGGGATCCCCTTGGTGCCAACAAAGATCTTCCTGACCTTGCACAGCTTGtactgcaaagaaaaaaacattaccatTGAGTATTTCAAGTCAAAATGTAAACCAACCATGCCAATCTATCACTACAATCCAGAAACACAATACTCTGCATCTTAAATGGACTTAAGATTGTGACCAGTTCATTTGTTCGATAACTACTTACAGCTTATTCAACTGTATAAATATGAACCCAACTCTGCTGCCTCCTGCCACCGAACTCACCTTGGCCTCCTCTGCGGTGATGCGGTGGACGGTGAAGCGGCCCTTGACATCGTAGATCAGACGGAAGTGCTCTCCGGTCTTCTCGATGCTGATAACATCATGAAGCCAGTGGGGTAGGTGATGTCGGTGCGGACCTTGCCGTCGATCTTGATGAACCTCTGCATGCAGATTTTCTTGACTTCATCTCCAGTCAGGGCGTACTTCAGACGGTTCCTCAGGAAGATGATGAGGGGGAGGCACTCCCTCAGCTTGTGGGGACCGGTAGAGGGACGAGGAGCAACACTCCTGTAAGCTTATCCAGCATCCATTTTCATCTCCAGT
>TU105033
TTCCCCAAGAGGCATGCCgagaatgtattttatatacacaaacatacatacacacactcagtacatacataaatccaaagatggacaaaacaGCTATACAGGATTCCAAGAGacaaaaaaagacctagaagaccacataaaagatgggaagatgaaatagattgactggtgtgacctggatgagacactacattaaaataaagggaTGTATCTTGTGAAGGTCTTCGtctagcagtggatcgataaaaACTGCTGATGCACGTTtacatgcatgtttatttttaaagatagcGAATAATAAAGAGAATGAAGGCGTTTCAAATGACTCATCTGAATGAAGTTGCAGTGAGCTCAGAACACAGGCCGAGCGCGGTGCACGGCCCGGGCGGTTTGAACACCAGGCTGTGCATCAGACTTACTGTAGCCAGGAGTTCAGTAGGAATGTTTATGACTGAACACGGTTTGGAGTTAGCTCCCAATAATCACTAATCAGGTATTTGCTTTTGCCATTTGAATTCTGGTATGTTTACCAGTCAACATCAATTCTGACTGCAGAATTAGCTTTCTTACAGTACTATAATTATGAACAGACGGCCAGTAGAACCAGGCAGAATGCTTGGCACCAGTAAAAAAGACTTGCAGACAAGCCTATATATTAGACAGGGGTTGATATTGGCAGGAGAACATTGGATTCATTTTAGAGACTCATGCTCTAGAAAAACATCTGTTTCTAGCTTTGAATCTCAAATGTCCAGCATATGTAAACGTATGCAGTCTGCAGTGGCAAAAGCAGCTTGTTCTggagttattttgttttaaactgaatgCTACTTGGTTATGAAACATTTGGACAGCAGTATctcaaacactaacacacatttaatcaatttaacattttgtgaCAACTTTTTGGACTTGATGCATCTTATGAATTGAAGGATGAAGTCAAGCAGAAACCAGTTTTACTCTGAAGGTCATATTATAGAACAGGACAATGGAGAACTCTGCAACAGTGCCACCTGCTGCAGACAGAGGGGGCAGCACACAGATCCCTCCCTTAAATAAAGCTGGACCATGAAACTATGATTGTAGTGACAATTCAAATCGGTAGAATTAAAAATTCTGGTTTGTTTTCAAGCTGTTCAATTCTGTTAAGCAATTAAAAGGGTTTTAACATCACAGAATGGAAATATGGCTGTGACTTTAAAATCATGAGTCAATTACAGCACTATGTCCCTCCCATGGGTAACttcccccagcccccccccaccaattAATGTGATCAGAGTAATGGATTTAGGCTAAGGGGTCTTCACCTTCAAAAAAGGACATGCATGTCTGCATTACTTACTGTCCAACTCAAGACATTGGAAGGAACAGCCTAGACATAAAGCGAGAACTTTAGTGACAACAAGACCATCCGTTTCTGTAAATAACCTTTTATTTGAAATCAGGGTGTTCTGCGGTTTGTACAGGGCTGCCAGTCAATAGCATTTAGTTGCTGCCCTGCTTGGCTGCCAGTCTCTTGTCTCTCTCCTCGGCAATGGTGAGGCGGATACCCTTTCCGCGGGGCAGGGAGACCCATGGCTTGTtaccTTGCCGATCACAAAAATGTTGGACAGCCTGGTGGCGAAGCTGTTGCCAGTGCTGTCCTTGACGTGCACCACATCAAAAGACCCAGGGTGTCTCTCCCGGTTGGTGATCACACCAATTCTGCCCAAGTTAGCACCACCAGTCACCATACACAGGTTACCTGTCAAACTTGATGAACTCTGTGATTTTGCCAGTCTCCAAGTCAATCCTGACGGTGTCGTTCACCTTGATGAGGGGGTCGGGGTACCGGATGGTGCGAGCATCGTGGGTCACTAAGTGGGGGATCCCCTTGGTGCCAACAAAGATCTTCCTGACCTTGCACAGCTTGTCCTTCACCGTGGTGCCCACCCCGTGGAGCTCAGTGTCCCAGTCCAA
>TU105035
TTCCCCAAGAGGCATGCCgagaatgtattttatatacacaaacatacatacacacactcagtacatacataaatccaaagatggacaaaacaGCTATACAGGATTCCAAGAGacaaaaaaagacctagaagaccacataaaagatgggaagatgaaatagattgactggtgtgacctggatgagacactacattaaaataaagggaTGTATCTTGTGAAGGTCTTCGtctagcagtggatcgataaaaACTGCTGATGCACGTTtacatgcatgtttatttttaaagatagcGAATAATAAAGAGAATGAAGGCGTTTCAAATGACTCATCTGAATGAAGTTGCAGTGAGCTCAGAACACAGGCCGAGCGCGGTGCACGGCCCGGGCGGTTTGAACACCAGGCTGTGCATCAGACTTACTGTAGCCAGGAGTTCAGTAGGAATGTTTATGACTGAACACGGTTTGGAGTTAGCTCCCAATAATCACTAATCAGGTATTTGCTTTTGCCATTTGAATTCTGGTATGTTTACCAGTCAACATCAATTCTGACTGCAGAATTAGCTTTCTTACAGTACTATAATTATGAACAGACGGCCAGTAGAACCAGGCAGAATGCTTGGCACCAGTAAAAAAGACTTGCAGACAAGCCTATATATTAGACAGGGGTTGATATTGGCAGGAGAACATTGGATTCATTTTAGAGACTCATGCTCTAGAAAAACATCTGTTTCTAGCTTTGAATCTCAAATGTCCAGCATATGTAAACGTATGCAGTCTGCAGTGGCAAAAGCAGCTTGTTCTggagttattttgttttaaactgaatgCTACTTGGTTATGAAACATTTGGACAGCAGTATctcaaacactaacacacatttaatcaatttaacattttgtgaCAACTTTTTGGACTTGATGCATCTTATGAATTGAAGGATGAAGTCAAGCAGAAACCAGTTTTACTCTGAAGGTCATATTATAGAACAGGACAATGGAGAACTCTGCAACAGTGCCACCTGCTGCAGACAGAGGGGGCAGCACACAGATCCCTCCCTTAAATAAAGCTGGACCATGAAACTATGATTGTAGTGACAATTCAAATCGGTAGAATTAAAAATTCTGGTTTGTTTTCAAGCTGTTCAATTCTGTTAAGCAATTAAAAGGGTTTTAACATCACAGAATGGAAATATGGCTGTGACTTTAAAATCATGAGTCAATTACAGCACTATGTCCCTCCCATGGGTAACttcccccagcccccccccaccaattAATGTGATCAGAGTAATGGATTTAGGCTAAGGGGTCTTCACCTTCAAAAAAGGACATGCATGTCTGCATTACTTACTGTCCAACTCAAGACATTGGAAGGAACAGCCTAGACATAAAGCGAGAACTTTAGTGACAACAAGACCATCCGTTTCTGTAAATAACCTTTTATTTGAAATCAGGGTGTTCTGCGGTTTGTACAGGGCTGCCAGTCAATAGCATTTAGTTGCTGCCCTGCTTGGCTGCCAGTCTCTTGTCTCTCTCCTCGGCAATGGTGAGGCGGATACCCTTTCCGCGGGGCAGGGAGACCCATGGCTTGTtaccctttaaaaaataaaaaggaagttTTAAATAAAGTCTCAAGAATATCACATTCATATTGAGACAGTGAAAATATAAGGACAGATTTCATCCAGCAATGGTAAGGTCAATCTGGGCTTTTAGTCTAGCCCAGAAAGGCAAAATGTTAAGAATCAATGGACTACCTGCCCTTGCCAAGAGCATTAAATGTGGAAGTCACTTGACTGAACAACACTTTCTAGAACAAACAGCTTCCTAGCACTCAATGCAACAGACAAGCTTAGTTTATCACTTGAACCAGAGTTTACGAAGACTCTGAAAAAACGTTTAGCACAGATTTCCAATCAACATTTGAAATTCATTAAATTCGGTAGCCCATACCTTGCCGATCACAAAAATGTTGGACAGCCTGGTGGCGAAGCTGTTGCCAGTGCTGTCCTTGACGTGCACCACATCAAAAGACCCAGGGTGTCTCTCCCGGTTGGTGATCACACCAATTCTGCCCAAGTTAGCACCACCAGTCACCATACACAGGTTACCTGTCAAACTTGATGAACTCTGTGATTTTGCCAGTCTCCAAGTCAATCCTGACGGTGTCGTTCACCTTGATGAGGGGGTCGGGGTACCGGATGGTGCGAGCATCGTGGGTCACTAAGTGGGGGATCCCCTTGGTGCCAACAAAGATCTTCCTGACCTTGCACAGCTTGtCTTGGCCTCCTCTGCGGTGATGCGGTGGACGGTGAAGCGGCCCTTGACATCGTAGATCAGACGGAAGTGCTCTCCGGTCTTCTCGATGCTGATAACATCATGAAGCCAGTGGGGTAGGTGATGTCGGTGCGGACCTTGCCGTCGATCTTGATGAACCTCTGCATGCAGATTTTCTTGACTTCATCTCCAGTCAGGGCGTACTTCAGACGGTTCCTCAGGAAGATGATGAGGGGGAGGCACTCCCTCAGCTTGTGGGGACCGGTAGAGGGACGAGGAGCAACACTCCTGTAAGCTTATCCAGCATCCATTTTCATCTCCAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105031 True 2811 lncRNA 0.43 5 8109651 8116827
TU105033 False 1968 lncRNA 0.44 4 8064531 8116827
TU105035 False 2601 lncRNA 0.44 6 8109651 8116827

Neighbor

gene id symbol gene type direction distance location
AMCG00021176 shroom4,LOC107588210 coding downstream 40129 7982400 ~ 8024402 (-)
AMCG00021175 clcn5a,LOC107715429,LOC106563682,LOC107557080,LOC107733513,LOC107673797 coding downstream 88410 7953072 ~ 7976121 (-)
AMCG00021173 NA coding downstream 150232 7906158 ~ 7914299 (-)
AMCG00021169 LOC107669001,LOC107691958,LOC107562838,LOC107742332,LOC107588216 coding downstream 248420 7815128 ~ 7816111 (-)
AMCG00021166 tmlhe,LOC106563395,LOC107715863,LOC107562156 coding downstream 572617 7482573 ~ 7491914 (-)
AMCG00021188 LOC107707922,LOC101154659,LOC108412583,LOC101071205 coding upstream 148122 8264949 ~ 8275630 (-)
AMCG00021192 col4a5,LOC106608922 coding upstream 245104 8361931 ~ 8372742 (-)
AMCG00021193 NA coding upstream 263162 8379989 ~ 8515922 (-)
AMCG00021191 NA coding upstream 424814 8541641 ~ 8548618 (-)
AMCG00021209 mtm1,LOC106577925 coding upstream 441405 8558232 ~ 8580015 (-)
G84156 NA non-coding downstream 84708 7978250 ~ 7979823 (-)
G84132 NA non-coding downstream 133015 7924021 ~ 7931516 (-)
G84108 NA non-coding downstream 258994 7801129 ~ 7805537 (-)
G84093 NA non-coding downstream 420531 7553620 ~ 7644000 (-)
G84089 LOC107575789 non-coding downstream 552542 7511561 ~ 7511989 (-)
G84203 NA non-coding upstream 84932 8201759 ~ 8207550 (-)
G84304 NA non-coding upstream 470742 8587569 ~ 8589053 (-)
G84305 NA non-coding upstream 472393 8589220 ~ 8590488 (-)
G84307 NA non-coding upstream 584752 8701579 ~ 8701918 (-)
G84311 NA non-coding upstream 624334 8741161 ~ 8741413 (-)
AMCG00021153 NA other downstream 942040 7115420 ~ 7122491 (-)
G83864 NA other downstream 1517954 6544492 ~ 6546577 (-)
G83761 NA other downstream 3313296 4703255 ~ 4751235 (-)
AMCG00021090 NA other downstream 5345612 2677585 ~ 2718919 (-)
G83428 NA other downstream 5605152 2457001 ~ 2459379 (-)
AMCG00021249 NA other upstream 3976650 12093477 ~ 12100854 (-)
G84814 NA other upstream 4410266 12527093 ~ 12527694 (-)
AMCG00021259 diaph2 other upstream 4603037 12719864 ~ 12801586 (-)
G84952 NA other upstream 5510508 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 5753112 13869939 ~ 13917868 (-)

Expression


Co-expression Network