G84188


Basic Information

Item Value
gene id G84188
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8072093 ~ 8074698 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU105039
attttaaaaagctgtactGCATTCACATAAGGATGACACGTGTGTGTAAGGATGATATAAGGATGAAAAAAGTGTGACATGACTGAAAAAAAGAGATCACATATAGaacatgcttttattattttattacttaatGGTTTCAGTCACTCAGTAGCAAATAAACAATCCCAGCAAGAACACCCAAATCATTTAGTTATCTGAATTGTCTTATAGTTAATCTCTCCAACATTAACTATGTtgcacaacaaaaaagaaagacaaaaataaatgttacaggtttaaaaatctgaaacaacaacaaacacacgcgcacacacacacaaaacagtttcACTTCTCACTTGCATGCCAGTGAGCAATGCCTCAGATCTCCTCCAGATGTTTTCTGGTACAAATTGTAGTTATTTAGTGGGTTAAATTAATGATTCCCTCCAGTATCTAAAACATAAGTCAAGAACACATAATAAGCAGCTTATCCAATGGTAGTTGTGTGCAATGAAAGGGCCTAAATAAAACAACGTAGGATATATTTGTTGTTGCATTGAGGTGCGAGATATTTTAACCATTATTAACCATGTAAGAGGTATTATCATTGTAAAGAGACTAGACTTGAGGTTTACATGTAAGCGGATACATTGTCACATGGCTCAagaatgcaatttaaatgttcaaataaataaataaatattgaaaaagcaCATGCATGGCAGTGACAATCAAAGCTGCTATGATGTTGGTAGCAACTCACATTGCCTGTATAAGAAACAATTATGGCTTTGTACCAGTTTAATAAGACTCTTATAACTATGTTACAGAGCATAATGTTAAgtttttctaatattttgtaattaaaaatatgtttagaaATATGCAGAAGTGTTACATGTTCATCATTAGACTTGTTCTGGATTGTGTTCCAAACTGCAGCCCTTTAATTGAGTTGAATTAAAAtggcaacattattattattattattaattcacacTTTTTTCCCCGATGGGACGCAAGCTGAAAACAATACTATCAGAAGCACAGGATATCACAGTgcaaacattatattatatatatatgctgcttttaaaaagtaaacaattaCTCAAACAGGATTCACAAAATAATCATTTCAACTATGCTCTGCACTTTgcaaataatctaaaataaggatgccaaattattactttttaaaccaaaatgtgtttgtttcctttataacaaaaatgtaagagactaataataataatcataataaagagTTCAGCACTTTTAATGTCCATGTTTAATGTGTAAGTTTGTATCTTAGCCATTCCCTGAAAACAGAATAGTTGGTGGGAAATTAATAAACTACGACAGAATCTACTTCCTTATAATTACCGTTTTTGAAACCTGCCCCACATTTGTGGGAAAAGGTCCTAAAGTGAAAATGCCTGTTATTTCCATGTACTGTGAATATATCAGTGTTTTAACAGTAAAGGGGGAAGACATCAGCTGCATATATTCAAAAgcaaaactacaacaaaaaagataaaagaaacaaCGACGCGGACACACCACcgcatgtgaaaataaaaccaaaacactgATCCTGTTTGATTGAGTGGAGAGTCTGATTACTCAACCCTATGTGCAGATTAGTTTTCTTCGTTTCCTATTCCTGTTTCATTCACAtctcttcacacagagagccTTCACTAAACCAGGCTAAATTGTAGAATTATAAAACACTTCGGCGGACCAAGAGCATTTTGCCAGCTGTTCTGATAAAAATCTCAAGGGTGAAGCAATTGTAACTCTTAAGACACCAGACTCTGTACGGATAcgttaataatttaaatagacaATGGTGTTGAATGGTATGAAAGGAAAGGCACTTAAAACCAAACACTTTCCCCTCGGGTCAAACCCAGCTGCCCTGAATTCACAAAGACATCGAATAGCATCTCATACAGCTGCCTGAGATGACTGAAGAGAGCTGAGTGGTGAGGAGGAGTATgaacatttaagaaaacatgcTGAGGTTTATACATTATAAAGGATAATATATAATCATGCATAAGGCTTCAGCTTTTTGGTGTCATTTTAAATCTAGCTTCCATTAGTCATAAACTGGcaataacagaagaaaaaaaaacaagattcaATTTGCGTTTTTGTCATTTAAGACTAACAATAATGCAGTTGCTCTACCGCTTAAAACAATTCTGTGAGGCAGGCTTGTAAGCATTTGTTGAAATCCATTCTTTCTTCAGTGTTCAAGGAAACAGAGCCCTAATAAAGCACAAGGCAGGGATTCGGGTGTGAAGGCGGCGCGGGGGACGGTTTGACACATGCAGGCCGGGCCCTGTGCGCTGTCACTGCATGGCACACGCGGCGCTGGGCAGGAAGTCCTGCACATACACGGCCACGGCCTTGGAGAGGTAGGTCATGCTGCCGAAGCGGCCACTAGGGGCACTGTCGTAGAGCAGCTTGCAGATGCCCGTGGCTTTGTCTCGCTCCATGATGTCTTCCTCGGCCCCCAGCTCCTTCTGTGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105039 True 2530 lncRNA 0.37 2 8072093 8074698

Neighbor

gene id symbol gene type direction distance location
AMCG00021176 shroom4,LOC107588210 coding downstream 47691 7982400 ~ 8024402 (-)
AMCG00021175 clcn5a,LOC107715429,LOC106563682,LOC107557080,LOC107733513,LOC107673797 coding downstream 95972 7953072 ~ 7976121 (-)
AMCG00021173 NA coding downstream 157794 7906158 ~ 7914299 (-)
AMCG00021169 LOC107669001,LOC107691958,LOC107562838,LOC107742332,LOC107588216 coding downstream 255982 7815128 ~ 7816111 (-)
AMCG00021166 tmlhe,LOC106563395,LOC107715863,LOC107562156 coding downstream 580179 7482573 ~ 7491914 (-)
AMCG00021188 LOC107707922,LOC101154659,LOC108412583,LOC101071205 coding upstream 190251 8264949 ~ 8275630 (-)
AMCG00021192 col4a5,LOC106608922 coding upstream 287233 8361931 ~ 8372742 (-)
AMCG00021193 NA coding upstream 305291 8379989 ~ 8515922 (-)
AMCG00021191 NA coding upstream 466943 8541641 ~ 8548618 (-)
AMCG00021209 mtm1,LOC106577925 coding upstream 483534 8558232 ~ 8580015 (-)
G84156 NA non-coding downstream 92270 7978250 ~ 7979823 (-)
G84132 NA non-coding downstream 140577 7924021 ~ 7931516 (-)
G84108 NA non-coding downstream 266556 7801129 ~ 7805537 (-)
G84093 NA non-coding downstream 428093 7553620 ~ 7644000 (-)
G84089 LOC107575789 non-coding downstream 560104 7511561 ~ 7511989 (-)
G84203 NA non-coding upstream 127061 8201759 ~ 8207550 (-)
G84304 NA non-coding upstream 512871 8587569 ~ 8589053 (-)
G84305 NA non-coding upstream 514522 8589220 ~ 8590488 (-)
G84307 NA non-coding upstream 626881 8701579 ~ 8701918 (-)
G84311 NA non-coding upstream 666463 8741161 ~ 8741413 (-)
AMCG00021153 NA other downstream 949602 7115420 ~ 7122491 (-)
G83864 NA other downstream 1525516 6544492 ~ 6546577 (-)
G83761 NA other downstream 3320858 4703255 ~ 4751235 (-)
AMCG00021090 NA other downstream 5353174 2677585 ~ 2718919 (-)
G83428 NA other downstream 5612714 2457001 ~ 2459379 (-)
AMCG00021249 NA other upstream 4018779 12093477 ~ 12100854 (-)
G84814 NA other upstream 4452395 12527093 ~ 12527694 (-)
AMCG00021259 diaph2 other upstream 4645166 12719864 ~ 12801586 (-)
G84952 NA other upstream 5552637 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 5795241 13869939 ~ 13917868 (-)

Expression


Co-expression Network