G84203


Basic Information

Item Value
gene id G84203
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8201759 ~ 8207550 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU105055
ccgTTAATGTGATCAAAATATCTCTGTATTCGTATAACAATCACAGTTTGCACAAGATTAAGAGAAATAGAAACCAATGGAGGGTTaagcatgaaaaataatttatttaaatgatataatTTCATCACATAGACAGAAAGTAGCTGCTACAGGGTCACAGCTACATTTAATACTGCTGGAGcgttttaatatttctttcctataagaaaaaaaaatgccattgaTATTTAGTACATATGAATTTGCTTGACTGTTAAGCCCATGGGAGtaattttaaagcttttcagtttttgtagTCCATTCCACATGTTTTTGGTTGCAGTTCTACTGCAGGATTAGTTTATGGCACATTACCTGTTATATTTCATTAGTACCCCTGCTTTGATTACTTACAGCACTATGTACAATATACTACTTTACACTGCTTTCATTCTGCAGTACTATAGCAACACTTTTTTAAAGGGTTCTCCTGACAGAAACATACAATATTCAGAAACTATACAGTACAAATTAACAGAGGAATTGACCTTCTGTGGGAGCCTGGCTATTTTGCCTCTTGTGGCCAATTTTGAACCCAGACAACATTTCACTGGgaataaagaaaagctttaaaagGTGTCCTCCAAGGTGTACAACAGAGCTAAAGATAAAGGGAGGCAGGCTTCATTAGTCACATGGGGGTCTGCAGCTCTGTGGTGAACATAAATTGTCACCACCAAACTGAGGGGAATATAGGGAGACCCAGGACACCTTTTCTGTTGGATACAATCATCTATTCCCTGCAGAGATTAACTACAAAAGTGGCTGCCAATTGCAAACTCCAAACTGACCTATTTGACAAAAGCATGTGGGAGAAAGAGAAGCAGAAGACACATAATTAAGAGGAATCTGGTCAACCGAAACCAAATGCATACACAGATCAGCTCAAAGGCTGATATCGATTACAATCCTGTCTGTAACCTTTTTTCCTTGGCAATTCCAAGAATGCTTGACCGTATTCTGTTAAAAAACGCAGGGGACTTTAGGGAGAGCAAGGGAAGGTATTCAGAAGTACAGGAGAATCAGGATTAAAGACGAAAGCTCACCACAGTCAAAGCCTCTCATGTTAGATCACCCAGCAGATTGCCCTGGTAAACTTTCCTGGTGGGCTTATCTTGATGGAGCAAACTGAAGGGAACAAACTCCAATACAATACATCCTGTTCATGTCTCGCAAATCCACTCCAAGGAAAATGCATCTCAAACAAGCTCAACATAAGTCTCCATGATTGCCCTGTGAGCTTGTCTTAAAATGTTCAGTAGAAAAAAGGTGCATCATATTACTATACACACATCCCTGTCTCTAGAGACCTATATGTTTGTTCAGAGAGTTCAATCTGAATTGAACCTAATGAAATGGCAACTGAAGGAAACCACCAAAGGAAGTCTGGCTTGAAACTTTTTGCTTGGCTTGGCCCATTCAGGGAACTCCAACACATTGCCTGTAACCTACATTCCTAAATGCAAGATATAATAAATAGGTGCAGGGAAGTAAGACTTTTGAAGACTCTTTGATATTCCACTTTTTAGTAGTGTGTCTtagtttgttattattagtactgAGTTGTTTTATATGTGCTGtgaaactgttaaaaatatgaCACAAGCACAAAATCCTACgaagttaaaaatatacaaataagagAGAGTAGTATGTTACAGACAGAGATGTGGAGTGGTCAGACAGTGTTCtgttcaaacaaattaaaagcaacACTGATCTGGATTTTCTATTACTGTGAAACACAACTAGGCTTTGGAATGTGAAAAGGCCATTTAGCCCGCTACACATCATTTGTTTCTGCACGTTTTGGTCCAAGAATTTGAagtgttaatgtttaaatttaatttgggCAAGGAAGAAAGGCCAGTGTTTGATAATTAGTCAGAAATGTCTTCATGCTCTGCAGACGGTTTAAGATGCACCTTTTAATAACGCACTCATCGGTCATCGTCTACATTGATGACATTATGATctactcctcctccctctcccaggTGCGCCAGgtgctccagtgtctgctgtgCAACGGACTGTATGTCAAAGCGGAGAAGTGCGAGTTCCACCGCCAGCGCGTGGGCTTCCTGGGCTACGTCATCGATGCCAGCAGTGTGCACATGGACCTGGAGAAAGTGAGCGCCGTCACTGACTGGCCGCAACACCCCCactgtgaaggagctgcagtgcttcctgggctttgccaacttttatctgtgttttttctgtaattacAGCTATCTGCTATCTGCTATCCTCTCTGTTAAAGGATCCCCCCGGACTTTCACCTGGACAGACTGCCGCATTCGCCCATCTGAAGACACTGTTTATGACAGCCCCCTTCCTCAGACACTCTGACCCCTCTCTCCCATTCATCGTGTAGGTGGATGCCTCTGAATCCGGAGTGGGAGCTCCCAGCGACACGGACAGCCGCCTAAGCTTCACCCTTGCGCTTTCTTCTCCCGAAAGCTGTCACCAGTGGAGCGCAACTATGACATCAGCAACCGTGATCTCCTCGATGTCAAGCTGGCTTTCAAGGAGTAGAAACACTGGCTCCCTTCCTGGTTCTGACTGACCACTGGAACTTGGAGTACATCCAGTCCAAAGTTTTGTTAGTGTAAACAACATTTCCTAGCTGTCTCCCCGTGCCTTGTTTAGCTTTGGTTCTACCGTGTATCCTTGACCTCCCGCTTgacttcccgaccacgactttgatcttcccctgattgcctgtttgcatgatcgcccgacccttgcACATGACCACGACCACAACCACATCCACGCCTGTCTTGACTATCCCAccagcaccgcaactgggttcccctgttcccgtgcccgtGGTACGTTACACCTTCGAGTGAAGAAACGCTTTCCAGTTAGCTTTCATTCACGTCCTGTTACAATACTGTCATAATAGATTTCAAGTCAAATAACAAATGGCACTGAGGTCTTCCCGGCAGACCTATTAAGGCCCATCGAGCTCAGCTTATGTAAAATTATAAGAAATCCACTGGCAAGGGATCAGACAGGTGGCGATTGGGCTTCTGAGTTTataaaaaggcatttgaaaGGATGACTTCTCAAATCAGTCAGACAACactttaaaatcagattttaataaaaaacacatggaACACATCTCCCCACTTATAATGAATCAATTCTTGGTTATATCTACATGCCTAAATCCCTGGATTGTTTGCACTAGCCGTAAATCGTAAATGACTTGCGAAGGTAAGTGGTGCAATAGAGTGTAGAGAAAGGCTTTCCAAACAACATAAACTTTAAGAAATGCAAGAATCGCTCAAATCTCTTCACAAGGAATAGCAGGGAAACAGTCTATTTAACAGATGGACCTGACCGGAGTGGAAATGCTATTCCTGATTCAAGTCACTACCTGAAGCTTTCAAGAGCATGAAGTCATGTATGTCTTAGAAGGGTGATCTGTGAGCCTTAATGCCTCTTTATTCTTGACAAAAGCACCACTCCACGATAATTCTGCTTCTCTTTCTTCCAGAACAGTTATTTTCTTCTCACAAGGGATTAAAATACAGATGGAGCACATTTAAgagtagtaataattataatagtaaccATAATAAAAAAACCTCTCTGCTAAGGAAGTGCAATAccaaggcatttaaaaaacacagaggCACTAACGCCAGAGTACAAggcaaacaaacactttttttttgtatcattcactaaatatttaaaacaagcGTCACTCACTGTTTTTAGTTACTGGATAcctgaattactttttttgtctttttttaatccaggGTAAATTGTCTTGCTGTTATATAGTCAAAAACGATAGCAACCCAAAGAGCTGTTTTCTGAGTTGGTAAATGTTTTCAAGGTGGTGTCCAGACTTGATAGCACCAGGAGCTTCTGTTGGAATAGAGAAAGCCAGTGAATGCGGCCCATTTCGTCTGTGTTTCATGAATGGAAAAGTGTGTTGAAAGGTCCAGATGGAGCTATATTGCATCCTCAGGTAGAGCAAGATGTTCTAGCTCACCACTGTTGCACTGTACCGgcatcaaacatttaaaatcaaaataaaaccataatgcAAGGCCCATATTCCATACATTCCCTTTAAAAATAGACTTCAGTAAGAACTGGAAATTTTCCGTACTAAAGAATTGCTACTTCTTTTGCTTACAACTTTTATTTGAGACTCCATTCCTTCTTGTTTcccaattaacaaaaaaaatgaagagaaacaagattgcaataaaaaaataaattagtaaaggAACTGCCGAGAAGCCTTTCCCCAAGTCGTTGATATGAATGCATATCCCTCTCATGACTTCTGTTTCTCAAAGTAAATCGATGTCCAGCTGCAATGCATAGGTTGTATTACAGTCGAGTGAATGTAACGACGAATAGGAGGAGCTGCTGAAGGTCAGCAGGTATGGAGTCCGTGATGCTCTGAAAGCCTTGTCCAGCCCGTGCCGCACAATCATGCAGGTCAGAGGAGTGCAGTAGAAAGGATTTTGTAAGGGTCATCTCTCAATCAAAAAGGGCAAGTGTCATTCTTCTCCCTGATGCTTGTTGTTTTACAAAGCTCGAAAATTACTCACCTCAAAAATTAAAGGGTCACCTGAGTGCAAGGAAACACAAAAAGcccttgtatatatattttgcttaccatgaatttgaaaaagaaaactaaaaacttgaCCAGTAGGCCAACAGGTGGAACATCTCCAGTCTAATGGAAACAGTCCCAGTGTCTCTGGAACACACTATAGCTGATACCAAGGACACACAGATCTCTAGCACACCAGTTACCACCAAAATATTCGTACCCTTATGACCCTTTAATTTTGGGGGAATTTTGATATAAGTATATTCGGCATACATACATTAGGCAGTGTGGAGCTCCATTCTAAACATTTGAGCTGTTTTGCATTACCATTTGTGACAAGTGTCTTTGTTGCCAAGTTCAATGTTGTAATCACTTATGCAATTTTGGCAGCCCTTGTCACACACAAGTATATATACAGGTGCACTCCGCTTCTAATGGAGTTTGTGAGACCATATCTGAAAAGGCAGGTCCCAACTAAATACCATGGGTTTCAAAGGGGAATTACTCTGGTTAAAACGTActcatttgtaatttatatttcttttaaaacataaatgtattgtattctaggcagtttttttttttttttataaaacttaCATCTGggacagtaaataaaaaaagtgggCTGGAGTTTGGCGCCAATAATGTCAACAAAGATGCTCCTGTAGTACGAGAATGAAAAGAACAGAATAGAGAAGTGCTCAGCATTGAGCAAAAAcgtaaattaataaacaatatttcaaatggggaaaataaatgtaattccaccatgaaaaaaaaaatagcttaccaaaaacaaaagtaaacacaATCATGAAAAACAGAGGAAAGATTGTCAGACAATTTGAACAAGTCAGGAGTTAAATCGccaaacaaatctgaaaatgtatgcttTCATATGTTGTTGATGTTATTAAACTAATACTGGTCCCAATATGAATTTAGAGAAAATGACGGCATGTAGTTTATAGTCAACTCATGTTGTTTGGCAATTACGTTTCctggtttaattatattttaagtaattgtgGCGgcagcattttcattattatcatgGTACAAGGTAtttcatatataatgtaataatttcctTGGTCCCTTGGGGTACATTACAAGTCGAGtgcacctatatatatatttatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105055 True 5792 lncRNA 0.40 1 8201759 8207550

Neighbor

gene id symbol gene type direction distance location
AMCG00021176 shroom4,LOC107588210 coding downstream 177357 7982400 ~ 8024402 (-)
AMCG00021175 clcn5a,LOC107715429,LOC106563682,LOC107557080,LOC107733513,LOC107673797 coding downstream 225638 7953072 ~ 7976121 (-)
AMCG00021173 NA coding downstream 287460 7906158 ~ 7914299 (-)
AMCG00021169 LOC107669001,LOC107691958,LOC107562838,LOC107742332,LOC107588216 coding downstream 385648 7815128 ~ 7816111 (-)
AMCG00021166 tmlhe,LOC106563395,LOC107715863,LOC107562156 coding downstream 709845 7482573 ~ 7491914 (-)
AMCG00021188 LOC107707922,LOC101154659,LOC108412583,LOC101071205 coding upstream 57399 8264949 ~ 8275630 (-)
AMCG00021192 col4a5,LOC106608922 coding upstream 154381 8361931 ~ 8372742 (-)
AMCG00021193 NA coding upstream 172439 8379989 ~ 8515922 (-)
AMCG00021191 NA coding upstream 334091 8541641 ~ 8548618 (-)
AMCG00021209 mtm1,LOC106577925 coding upstream 350682 8558232 ~ 8580015 (-)
G84184 NA non-coding downstream 84932 8064531 ~ 8116827 (-)
G84188 NA non-coding downstream 127061 8072093 ~ 8074698 (-)
G84156 NA non-coding downstream 221936 7978250 ~ 7979823 (-)
G84132 NA non-coding downstream 270243 7924021 ~ 7931516 (-)
G84108 NA non-coding downstream 396222 7801129 ~ 7805537 (-)
G84304 NA non-coding upstream 380019 8587569 ~ 8589053 (-)
G84305 NA non-coding upstream 381670 8589220 ~ 8590488 (-)
G84307 NA non-coding upstream 494029 8701579 ~ 8701918 (-)
G84311 NA non-coding upstream 533611 8741161 ~ 8741413 (-)
G84332 hmgb3a,LOC106563671,LOC107750581,LOC107678073,LOC107561946 non-coding upstream 628725 8836275 ~ 8840659 (-)
AMCG00021153 NA other downstream 1079268 7115420 ~ 7122491 (-)
G83864 NA other downstream 1655182 6544492 ~ 6546577 (-)
G83761 NA other downstream 3450524 4703255 ~ 4751235 (-)
AMCG00021090 NA other downstream 5482840 2677585 ~ 2718919 (-)
G83428 NA other downstream 5742380 2457001 ~ 2459379 (-)
AMCG00021249 NA other upstream 3885927 12093477 ~ 12100854 (-)
G84814 NA other upstream 4319543 12527093 ~ 12527694 (-)
AMCG00021259 diaph2 other upstream 4512314 12719864 ~ 12801586 (-)
G84952 NA other upstream 5419785 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 5662389 13869939 ~ 13917868 (-)

Expression


Co-expression Network