G84276


Basic Information

Item Value
gene id G84276
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8555961 ~ 8558418 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU105139
TaccagattaatttatttttttctgcttcaggACTGGTATTCCTCCACTATAAAAATGCTATTTTTCTTAAAAGTTACCCATGTGGTACATACTGATAATACAAGTAACTTGGTTTGAGGGAGGTAAAGgattaaagacaaaaacaaattcaatcaAACTGGGGGTTTTGCTGCCACTGAcatatattgaatatttatatgATTCGATATATCCCAATTTTATTATTCACATACACAGCTGCCTATTAATGTATAcaggttttgtttagttttgttctatatCTTGAAATTCTAGACAAATAAGTGCATATTTTACTTTGGCAGCTATTTAAAAAGATCCAGTATGCAAAACACTTGGTAAAAAGTCTCTGCCCCTCTTAACACAAGCAATTGAACAATCAgtgcatatgtatgtaaataattatatatacatatataattattttcttaatacaaATGGGAGTTAATAATGTTAACCCATTTGAATGACCTCTTCAGTACACCTGCATCAATAAAGCTTTAGTTTCCATCATAGAGTTCTTTAGATTTCAAGGTAATAAAGCAAGCTAGGTTTtgaactttaaattaatttaattagaattattTACAGAGTCAAGGACTGTCTAACAGTagcgcatatatatatataaactatatatatatatatatatatagtttaatttcaCTATAAGAGAATAGAATCTCTTTAAACTGCAATActaagtaaatatacattttaaaaccaataatGGACAATAGTTCGCTAAGTAACAAAGCTGGTGTTCCCCTCAAATACAAATCACTGGAGTCCAGCAATGCAATCAATTTCTAACCACTCGTGGTTGAGCGAGGGGGAGGGCTCATTAACATTTGCTATGATGTGtaataatacagataatacACACCTTCCccttaaaaaacagaaaacaaacgaACTTTCAAAGAAACCAAACCCGAAAAGTACTACTTTTCAATAACAACCTTTATCTCTTTCCATTTATAAAACTTGAGCTTTAcactacataaaataattatatcttaCAACAATCTATAGAACTTCAAACAGTAAAATAGGCTTTCTGAGGTAATTACAGAATTACTGTacttgtaaaaaacaaataaaaattcCACCAAAAACAGATCTGTAGAGATTCCTTCTGATGTTTAACTGCAGTTCCCCAATTTACAGTCTTCAAATGCTATCCATCTAAACTACTGagagtaaaaaaattaaaataaaaaggggggaGGCAACAGTTAAACAGAGACAGCCTGTCTTGCTCATAATGCCACGTTCAAAAACAGTTCAATACAAACAATCCATTTAAATCGGATCCTACATAATCAAGGCACAGCATAAATCTAACCCAACTCCTAGACTTCTTTCAAATAAAAGCTGATGGCTCTTCgtattaataaaaatagttCCCAAGGATCAGTTTGCTGCAAGAAAAGATTCCACACTGTACTTTGGATTGAACTTTCTATGAGGAATAAGAAGCTTTGCTTGAATTTACATTGCTTTAACCTCAATGGACCAAAGGAAGATCATCCACACTAAAGCTAAATTTGAAGGACCCATTTTTAACTAAATCtatacaataaatgaaaaattaaattggaCACTTTTTTCAAGTTATAAGAATGcttgtaattgaaataaattaaatgtcatttggaataaaccaatcagtgctatttttttttttttttttttttttttttttttttttacacctggcgtataactgtatattattttatgagaGAAATTAGGAGAAATGTGTTCAAACTCTAGGAACTGTCCCTAAACTGATTTTCTGAATCCTACCCCAAGATCCCAACCACATCCATCCTGTGCAATTCAATCCAAATAAACTATTTCAAGCAGCACTAATTACATCATGTGTTGTATAAGacataagaagaaaaaataaaacccatatttgtcacaaagaaaacagtaacttgccaaaaaaatatatatttctggtCTCCCCCACCACTCCCCCCCATACGTTCTGCGATTACTGGAAGACATAATTCCACACTTCGAGGAGCGATGGAGGGACTGCAGCTGGGAACAGGCACTCTCTGCGCAATATGAAGAGCTATGAGCTTTCGCTTCAAGATGCCTCAGAGGAAATGGGTTTAAggcttttaaaactgtaaatgtgaaGGCTATGGTgtgatttattgcatttttaacgTATTATTTACAAACTCCCTGAGGATGGCCGGGGGTCTTCTTTCAGAATGGAGTCTGTACATGGTGGGCGATCTGCGTGGGGGAGGCCGGGGAATTGGTGGAGTTATTGGCGATGCGCGCCGAGTCCGAGAGCTGCAGCTCCTCCAGTTTCTTGAGGTACTGATCCCGCAGGGCCAGGAGCTCTCGGTAGCGCTGCTCCACCGGGTTCTGCTGCTGTGGAGGGCAAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105139 True 2438 lncRNA 0.35 2 8555961 8558418

Neighbor

gene id symbol gene type direction distance location
AMCG00021189 ankrd46 coding upstream 801 8549054 ~ 8555160 (+)
AMCG00021190 NA coding upstream 15312 8502496 ~ 8540649 (+)
AMCG00021186 NA coding upstream 221202 8331313 ~ 8334759 (+)
AMCG00021187 NA coding upstream 242536 8300022 ~ 8313425 (+)
AMCG00021185 rasl11a,LOC107596470,LOC107707904,LOC108412587,LOC107684967 coding upstream 272669 8276056 ~ 8283292 (+)
AMCG00021194 NA coding downstream 207883 8766301 ~ 8778421 (+)
AMCG00021195 NA coding downstream 222133 8780551 ~ 8801816 (+)
AMCG00021200 hmgb3a,LOC107750581,LOC107678073,LOC106563671,LOC105024648 coding downstream 277794 8836212 ~ 8842182 (+)
AMCG00021199 NA coding downstream 293907 8852325 ~ 8855863 (+)
AMCG00021196 trpc5,LOC108431879,LOC101077030,LOC108261176,LOC106523850 coding downstream 378560 8936978 ~ 8939942 (+)
G84244 NA non-coding upstream 179923 8375331 ~ 8376038 (+)
G84196 NA non-coding upstream 348583 8201838 ~ 8207378 (+)
G84155 NA non-coding upstream 576135 7978217 ~ 7979826 (+)
G84095 NA non-coding upstream 855278 7657193 ~ 7700683 (+)
G84090 NA non-coding upstream 995841 7553620 ~ 7560120 (+)
G84298 NA non-coding downstream 29180 8587598 ~ 8588963 (+)
G84477 LOC108440084,LOC106603334,LOC103024645,LOC105026974 non-coding downstream 1306268 9864686 ~ 9878867 (+)
G84495 NA non-coding downstream 1447693 10006111 ~ 10009690 (+)
G84535 NA non-coding downstream 1666665 10225083 ~ 10225298 (+)
G84536 NA non-coding downstream 1669487 10227905 ~ 10262453 (+)
AMCG00021180 NA other upstream 512662 8040170 ~ 8043299 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other upstream 1434724 7111997 ~ 7121237 (+)
AMCG00021133 NA other upstream 2009360 6544234 ~ 6546601 (+)
AMCG00021114 NA other upstream 4322164 4202711 ~ 4233797 (+)
AMCG00021113 vma21,LOC107565438,LOC107741184,LOC107680358,LOC108442053 other upstream 4426588 4127070 ~ 4129373 (+)
G84301 NA other downstream 73309 8631727 ~ 8633410 (+)
G84425 NA other downstream 857849 9416267 ~ 9423419 (+)
AMCG00021240 LOC107742636 other downstream 1911645 10470063 ~ 10719327 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other downstream 2404730 10963148 ~ 10987174 (+)
G84749 NA other downstream 3516927 12075345 ~ 12100707 (+)

Expression


Co-expression Network