G84332 (hmgb3a,LOC106563671,LOC107750581,LOC107678073,LOC107561946)


Basic Information

Item Value
gene id G84332
gene name hmgb3a,LOC106563671,LOC107750581,LOC107678073,LOC107561946
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8836275 ~ 8840659 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU105215
TCTAAAAATGTAATACGGTTTTATTAACTTCAAAAAACATTGTAGCATtctaaacatacaaaaatgaaattatatttttagttgCAAAGTTTTTAAGTACAGGATTAACATCAACAGTTGTACTCTCTCCACTTTGAAACAAATGGGAGTTTCCTACAACagttaaaaccaaacaaaaaacgcacttgaaaaccaaaataaaatccaaatgtCCATGCTATTCACACTCGTCCTGTACCAAATTGCAGCAGAATGCTAGTTTGCTATATACAGAAAGACACTTGAAGCTAAAGAGAAATCcaacagtgtaaataaacacCAGCCTCTTTTGTAGCATACATCGAAAGTGGCAGTTTCTAAACTATTCTAACGTAGCTTAGCACGTTCCACAGCTTCAAGTATATGCCACAATATTGGTACATGTCTTACAAACTATGTCTGTACAATTTAAAACCCAggagggaaggagaaaaaaaaaaactaagtcAATAACCATATACAGTTACACACCACTTtacatttctctttaaaaaattaaattaaaaaaagggaagggaaaaaatgtatatattttgcaatgctACAACTTGTTTAAATACTTCCTGTTACTCAGCCAGCAAAGTACAATGAGCCAGGAGAACACCAGAGAGATGGAAGTGTTaagacatatatacacacacacatacagtgggCTGGGGCAAGTTTCATAGAGTGGGGAGGATaggtgtgattttattttctttacaatttcATTGTTGCAAATCTTGCAGCACAGCATGTGGAGCTAAACTGAAGAGCTTTAACTTCATAAGCAACAGGGTTATAAAGAGGGATGGGGCTGGTGATGCAGTTTCCAGTGTTTTCCCTACCCTATTGCAATCATGctgggggaagaaaacaaaacaaaaaaaacaaaaaaaaaacatgggggGGGAAACctattcatcatcatcttcatcctcatcctcctcttcgTCTTCCTCgtcatcctcatcatcatcatcgtcatcatcgtCGTCAAGCTTCTTGGGGGCTGCCTTGGGGGCAGCTTTAGCCCCATCCACTTTACCCTTGGACTTGTATTTTGCAACATCCTAGAGGAGATACAGAAATTCAGATCTCAGTTTAGCAGGGGTTAAGTCAGTCACCACAAAACCAACAGATAACATGAACTGCCCTACACCATCCCAATTTCAGATCATATGAATGGATTTTAACAATGTGAACCTTGCAGAGTTAAAAGTATCAAATGGGTGATTAAGGAATCCCAAACAATACAAAGGCTTCAAGTTTACagcaatatacatatttaaagtacCTTCTTATATTTTTCCTTCAGCTCATTGGCTTTGTGCAAGTAGGGCTGTTTAGTAGTGTCATTGAGTTTATTCCACATTTCCCCAAGCTTCTTGGCTACCTCTCCAATGCTCAGACTGGGATTGGTACCCTTAATTTTAGGGCGCTGCTCTGAGCAGAACAGAAAGAAGCCAGACGGGGGCCTCTTGGGAGCATTGGGGTCCTTCTTCTTCCCTCCCTTTCCAGGCATGTAAGTTTTCATTTCGGTGTCATACCGGGCCTTGTCCTGCTTTGCCAGATCCTCGAACTTGGACTTCTCCTTGGCTGACATGGTCTACAAAACAAGCAGACATGGACATTAGATCATGTTTAGGGATGAATGTGTTGTACCTCCAGCCCCTATAGATAATCAATGCACCGAAGGTACACATTTAAGGTACCAAATAAGATCAAGATCATGAGTCAgatcaattaaacattaagcACCAACCTTAGGCCCACCCCCGAGCCCCATTTACGCACTTGGACTACATTTCTTAACCTTGACTACTTATCAATACCTTCCATCTTCCTGAGCATTTCTTGGAGAACTCTGCAAAGTTGACTGGGATTTCTGGATTCTTCTTCTTGTGCTCCTCACGACAAGTCTGCACGAAGTAGGCATAGGCAGACATCTTGCCCTTGGGTTTTCTGGGGTCACCTTTAGCCATTGtgatcagttttgttttgctgtagtttgtttttctcgTTTTGTCAGTACTCTAAAAAGGGAAATGCAAGAGATAATTTTACCCACATATTCAACCACTATTTGAGCATTCTTAACCATTTGACATTATCAATGTGTTAATTACAACAGATTTCCCAGGAGGACTTTGTGCATTTGGTGTCTGGCATGTCCTTCATACATGAAGTCATGCACCTCAAGAGATTCCACTGAATTTTGACCAGTCTTAAATTGTCTTGCTAGgttcatacaaaaataatacattttttcctgAAATCAAGGTTTTCAcccatgtatatataaaataaaaaataaaaaataaataaataaaaacttaagtCTGACCTACTTTCCAGAATTATTAAAAGCACAACAGATCCACAAAATTGTATTGGGATCAAAAtatgtccttttatttttaactagggAAAAAACAAGTGTATGTATAATTGCATATTGTAGTTGATTAATATACATCGAAATAGATgacactttaaaattaaatttaaaatgtgcagaattgtttggtttgtggttttaacgaaagtgaaaaaataaataaaaatcaaatcaaatccattATGTTCCCCGCCATATTTCTGCCGTGCCCCCGCCCAAGCCCCGGTATTAACACGGGCGTAATAGTCATTAAGTGCCCCGCCGGTACCGGAGCCCGTGGCGAGGCTGGCACTGCAACTGGAGTCCGTGCAGAGAAAAGCGGGTCATCAACACCAATAATTCATCttccattttgtgaaatgcttGCTCATGAAAGAAACTCCCCCTTAAATGCAACCTTCTTCCCTACCTTATTCttactttgcaaaaaaaatcaccgttttttaaagtttaaaacctATACTTGCAAAGCTGACTTTTCTCCCAGTACATGTATATAGTATCGGTGCTGGCGGTGTAGAGAAGGCTTCGCTATTCTCTGCCATAGCTCCCATTCGCTAAAATGGCTTCTGCTCAGCGAGCTATAGAGGAAGGCTTAAGGCTGCTATGGCTGTAACAAAGCGACACACACCCCCTCGGCTTACAAAGGCAATCCTATATACATCCATCAACGCAAAAAtgctaaaaacaaaaggatCGGTTAAAAGAGAGTCTGTTCTTTTCATTTAGATAGAGGTTTCGTGAATGTGAAGCTAGGATTTGGAGAATTTAACTATTTTCTAAAGTTGTATCCTCGTCTACCGCTTGGTGCAATGCTGTCTGTAACAAAGACTATGCGCCAGCCATTTCTATACTTAGTCATTCGTGGGAAAACAGACGAAGTCGAAAATAACCGAAAAACGTCGAGGACGGGCATTTATTTAACGCACGATGTTAGAGAAagtaatttaaagagaaaaacGAAAACAATTACGGTTTTTCGACGGCTCGGCGTGCTTTTTCTCCTGAACAGTTTGAAGGTCTGTGCCGTGTGAGAATCGCTTCTTGTCAATGGCTCTAATCGCCAGCCATTTTAATGCACTCAGTACAACCTCGAAGtgcagagattaaaaaacaataatcgGCATTTTCTCGTGTTTTTCTCAACATTTCCTCTCGGCTAACGATGAGGACAAAAGAACCCAGTCGAAAACGAAGGGTTTCAACTCAGAATGAgcattaaaatgagaaaaacaacacgCAAGTGTAACTATTAAAAGGGCCGCCTCGTCCTTATGGACTACAGTGCCAGCCATATTCACGTATTACAACAGCAGCAATGCGTGTGGAGAATACGGGCTCGACATTAaagcttttatttccttttcacaTTTATGACAGAAAAAGGCTGGGGGAAAAATAcctagaggaaaaaaaaaagaaaaaaaaaactacagccgaaaaatacagatatagatTTATACCGAACTCAAAAACTGCCCAAGTCAAACGCCTCACTCAAGACATTTAGACAcgattttagtatttttacatttacatcaaCCGACAGCGGAGAACACATTTAAATCCTAAACCACTCAGTTTAAATCGTTTTAAAGGTTAAGACAGTcgcaggcaaaataaataaatactattttaccACAGTATTACACGTCGTTTAAAGCATATTAAATGATATTTCAAAAGCAGTACAATTTTCAACACAAAGATGAGGCCAACTAAAACCGCATCTTTCCCGagtagaaagaaaaagatgacaCCCACTACAGCCCGAAAGACCACATTTTGAAGCCCGACACCCGCACTGGGAGCCG
>TU105216
TCTAAAAATGTAATACGGTTTTATTAACTTCAAAAAACATTGTAGCATtctaaacatacaaaaatgaaattatatttttagttgCAAAGTTTTTAAGTACAGGATTAACATCAACAGTTGTACTCTCTCCACTTTGAAACAAATGGGAGTTTCCTACAACagttaaaaccaaacaaaaaacgcacttgaaaaccaaaataaaatccaaatgtCCATGCTATTCACACTCGTCCTGTACCAAATTGCAGCAGAATGCTAGTTTGCTATATACAGAAAGACACTTGAAGCTAAAGAGAAATCcaacagtgtaaataaacacCAGCCTCTTTTGTAGCATACATCGAAAGTGGCAGTTTCTAAACTATTCTAACGTAGCTTAGCACGTTCCACAGCTTCAAGTATATGCCACAATATTGGTACATGTCTTACAAACTATGTCTGTACAATTTAAAACCCAggagggaaggagaaaaaaaaaaactaagtcAATAACCATATACAGTTACACACCACTTtacatttctctttaaaaaattaaattaaaaaaagggaagggaaaaaatgtatatattttgcaatgctACAACTTGTTTAAATACTTCCTGTTACTCAGCCAGCAAAGTACAATGAGCCAGGAGAACACCAGAGAGATGGAAGTGTTaagacatatatacacacacacatacagtgggCTGGGGCAAGTTTCATAGAGTGGGGAGGATaggtgtgattttattttctttacaatttcATTGTTGCAAATCTTGCAGCACAGCATGTGGAGCTAAACTGAAGAGCTTTAACTTCATAAGCAACAGGGTTATAAAGAGGGATGGGGCTGGTGATGCAGTTTCCAGTGTTTTCCCTACCCTATTGCAATCATGctgggggaagaaaacaaaacaaaaaaaacaaaaaaaaaacatgggggGGGAAACctattcatcatcatcttcatcctcatcctcctcttcgTCTTCCTCgtcatcctcatcatcatcatcgtcatcatcgtCGTCAAGCTTCTTGGGGGCTGCCTTGGGGGCAGCTTTAGCCCCATCCACTTTACCCTTGGACTTGTATTTTGCAACAcCTTCTTATATTTTTCCTTCAGCTCATTGGCTTTGTGCAAGTAGGGCTGTTTAGTAGTGTCATTGAGTTTATTCCACATTTCCCCAAGCTTCTTGGCTACCTCTCCAATGCTCAGACTGGGATTGGTACCCTTAATTTTAGGGCGCTGCTCTGAGCAGAACAGAAAGAAGCCAGACGGGCCTCTTGGGAGCATTGGGGTCCTTCTTCTTCCCTCCCTTTCCAGGCATGTAAGTTTTCATTTCGGTGTCATACCGGGCCTTGTCCTGCTTTGCCAGATCCTCGAACTTGGACTTCTCCTTGGCTGACATGGTCTTCCATCTTCCTGAGCATTTCTTGGAGAACTCTGCAAAGTTGACTGGGATTTCTGGATTCTTCTTCTTGTGCTCCTCACGACAAGTCTGCACGAAGTAGGCATAGGCAGACATCTTGCCCTTGGGTTTTCTGGGGTCACCTTTAGCCATTGtgatcagttttgttttgctgtagtttgtttttctcgTTTTGTCAGTACTCTGCCTGTGCGCGC
>TU105217
TCTAAAAATGTAATACGGTTTTATTAACTTCAAAAAACATTGTAGCATtctaaacatacaaaaatgaaattatatttttagttgCAAAGTTTTTAAGTACAGGATTAACATCAACAGTTGTACTCTCTCCACTTTGAAACAAATGGGAGTTTCCTACAACagttaaaaccaaacaaaaaacgcacttgaaaaccaaaataaaatccaaatgtCCATGCTATTCACACTCGTCCTGTACCAAATTGCAGCAGAATGCTAGTTTGCTATATACAGAAAGACACTTGAAGCTAAAGAGAAATCcaacagtgtaaataaacacCAGCCTCTTTTGTAGCATACATCGAAAGTGGCAGTTTCTAAACTATTCTAACGTAGCTTAGCACGTTCCACAGCTTCAAGTATATGCCACAATATTGGTACATGTCTTACAAACTATGTCTGTACAATTTAAAACCCAggagggaaggagaaaaaaaaaaactaagtcAATAACCATATACAGTTACACACCACTTtacatttctctttaaaaaattaaattaaaaaaagggaagggaaaaaatgtatatattttgcaatgctACAACTTGTTTAAATACTTCCTGTTACTCAGCCAGCAAAGTACAATGAGCCAGGAGAACACCAGAGAGATGGAAGTGTTaagacatatatacacacacacatacagtgggCTGGGGCAAGTTTCATAGAGTGGGGAGGATaggtgtgattttattttctttacaatttcATTGTTGCAAATCTTGCAGCACAGCATGTGGAGCTAAACTGAAGAGCTTTAACTTCATAAGCAACAGGGTTATAAAGAGGGATGGGGCTGGTGATGCAGTTTCCAGTGTTTTCCCTACCCTATTGCAATCATGctgggggaagaaaacaaaacaaaaaaaacaaaaaaaaaacatgggggGGGAAACctattcatcatcatcttcatcctcatcctcctcttcgTCTTCCTCgtcatcctcatcatcatcatcgtcatcatcgtCGTCAAGCTTCTTGGGGGCTGCCTTGGGGGCAGCTTTAGCCCCATCCACTTTACCCTTGGACTTGTATTTTGCAACATCCTTCTTATATTTTTCCTTCAGCTCATTGGCTTTGTGCAAGTAGGGCTGTTTAGTAGTGTCATTGAGTTTATTCCACATTTCCCCAAGCTTCTTGGCTACCTCTCCAATGCTCAGACTGGGATTGGTACCCTTAATTTTAGGGCGCTGCTCTGAGCAGAACAGAAAGAAGCCAGACGGGCCTCTTGGGAGCATTGGGGTCCTTCTTCTTCCCTCCCTTTCCAGGCATGTAAGTTTTCATTTCGGTGTCATACCGGGCCTTGTCCTGCTTTGCCAGATCCTCGAACTTGGACTTCTCCTTGGCTGACATGGTCTACAAAACAAGCAGACATGGACATTAGATCATGTTTAGGGATGAATGTGTTGTACCTCCAGCCCCTATAGATAATCAATGCACCGAAGGTACACATTTAAGGTACCAAATAAGATCAAGATCATGAGTCAgatcaattaaacattaagcACCAACCTTAGGCCCACCCCCGAGCCCCATTTACGCACTTGGACTACATTTCTTAACCTTGACTACTTATCAATACCTTCCATCTTCCTGAGCATTTCTTGGAGAACTCTGCAAAGTTGACTGGGATTTCTGGATTCTTCTTCTTGTGCTCCTCACGACAAGTCTGCACGAAGTAGGCATAGGCAGACATCTTGCCCTTGGGTTTTCTGGGGTCACCTTTAGCCATTGtgatcagttttgttttgctgtagtttgtttttctcgTTTTGTCAGTACTCTAAAAAGGGAAATGCAAGAGATAATTTTACCCACATATTCAACCACTATTTGAGCATTCTTAACCATTTGACATTATCAATGTGTTAATTACAACAGATTTCCCAGGAGGACTTTGTGCATTTGGTGTCTGGCATGTCCTTCATACATGAAGTCATGCACCTCAAGAGATTCCACTGAATTTTGACCAGTCTTAAATTGTCTTGCTAGgttcatacaaaaataatacattttttcctgAAATCAAGGTTTTCAcccatgtatatataaaataaaaaataaaaaataaataaataaaaacttaagtCTGACCTACTTTCCAGAATTATTAAAAGCACAACAGATCCACAAAATTGTATTGGGATCAAAAtatgtccttttatttttaactagggAAAAAACAAGTGTATGTATAATTGCATATTGTAGTTGATTAATATACATCGAAATAGATgacactttaaaattaaatttaaaatgtgcagaattgtttggtttgtggttttaacgaaagtgaaaaaataaataaaaatcaaatcaaatccattATGTTCCCCGCCATATTTCTGCCGTGCCCCCGCCCAAGCCCCGGTATTAACACGGGCGTAATAGTCATTAAGTGCCCCGCCGGTACCGGAGCCCGTGGCGAGGCTGGCACTGCAACTGGAGTCCGTGCAGAGAAAAGCGGGTCATCAACACCAATAATTCATCttccattttgtgaaatgcttGCTCATGAAAGAAACTCCCCCTTAAATGCAACCTTCTTCCCTACCTTATTCttactttgcaaaaaaaatcaccgttttttaaagtttaaaacctATACTTGCAAAGCTGACTTTTCTCCCAGTACATGTATATAGTATCGGTGCTGGCGGTGTAGAGAAGGCTTCGCTATTCTCTGCCATAGCTCCCATTCGCTAAAATGGCTTCTGCTCAGCGAGCTATAGAGGAAGGCTTAAGGCTGCTATGGCTGTAACAAAGCGACACACACCCCCTCGGCTTACAAAGGCAATCCTATATACATCCATCAACGCAAAAAtgctaaaaacaaaaggatCGGTTAAAAGAGAGTCTGTTCTTTTCATTTAGATAGAGGTTTCGTGAATGTGAAGCTAGGATTTGGAGAATTTAACTATTTTCTAAAGTTGTATCCTCGTCTACCGCTTGGTGCAATGCTGTCTGTAACAAAGACTATGCGCCAGCCATTTCTATACTTAGTCATTCGTGGGAAAACAGACGAAGTCGAAAATAACCGAAAAACGTCGAGGACGGGCATTTATTTAACGCACGATGTTAGAGAAagtaatttaaagagaaaaacGAAAACAATTACGGTTTTTCGACGGCTCGGCGTGCTTTTTCTCCTGAACAGTTTGAAGGTCTGTGCCGTGTGAGAATCGCTTCTTGTCAATGGCTCTAATCGCCAGCCATTTTAATGCACTCAGTACAACCTCGAAGtgcagagattaaaaaacaataatcgGCATTTTCTCGTGTTTTTCTCAACATTTCCTCTCGGCTAACGATGAGGACAAAAGAACCCAGTCGAAAACGAAGGGTTTCAACTCAGAATGAgcattaaaatgagaaaaacaacacgCAAGTGTAACTATTAAAAGGGCCGCCTCGTCCTTATGGACTACAGTGCCAGCCATATTCACGTATTACAACAGCAGCAATGCGTGTGGAGAATACGGGCTCGACATTAaagcttttatttccttttcacaTTTATGACAGAAAAAGGCTGGGGGAAAAATAcctagaggaaaaaaaaaagaaaaaaaaaactacagccgaaaaatacagatatagatTTATACCGAACTCAAAAACTGCCCAAGTCAAACGCCTCACTCAAGACATTTAGACAcgattttagtatttttacatttacatcaaCCGACAGCGGAGAACACATTTAAATCCTAAACCACTCAGTTTAAATCGTTTTAAAGGTTAAGACAGTcgcaggcaaaataaataaatactattttaccACAGTATTACACGTCGTTTAAAGCATATTAAATGATATTTCAAAAGCAGTACAATTTTCAACACAAAGATGAGGCCAACTAAAACCGCATCTTTCCCGagtagaaagaaaaagatgacaCCCACTACAGCCCGAAAGACCACATTTTGAAGCCCGACACCCGCACTGGGAGCCG

Function

symbol description
hmgb3a Predicted to enable DNA binding activity, bending. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in several structures, including axis; intermediate cell mass of mesoderm; mesoderm; nervous system; and pectoral fin bud. Human ortholog(s) of this gene implicated in syndromic microphthalmia 13. Orthologous to human HMGB3 (high mobility group box 3).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105215 True 4236 lncRNA 0.39 2 8836308 8840659
TU105216 False 1618 lncRNA 0.41 5 8836275 8840659
TU105217 False 4010 lncRNA 0.39 3 8836308 8840659

Neighbor

gene id symbol gene type direction distance location
AMCG00021203 NA coding downstream 17432 8802262 ~ 8818843 (-)
AMCG00021204 tmem185a,t185l,LOC106563673,LOC108429425 coding downstream 61881 8769333 ~ 8774394 (-)
AMCG00021201 NA coding downstream 72653 8761703 ~ 8763622 (-)
AMCG00021202 NA coding downstream 199384 8631672 ~ 8636891 (-)
AMCG00021208 NA coding downstream 232599 8591024 ~ 8603676 (-)
AMCG00021205 NA coding upstream 141837 8982496 ~ 8999604 (-)
AMCG00021206 dach2,LOC107581921 coding upstream 227359 9068018 ~ 9074386 (-)
AMCG00021207 dach2 coding upstream 244104 9084763 ~ 9122429 (-)
AMCG00021210 dach2 coding upstream 392766 9233425 ~ 9234199 (-)
AMCG00021213 stk26 coding upstream 500794 9341453 ~ 9367653 (-)
G84311 NA non-coding downstream 94862 8741161 ~ 8741413 (-)
G84307 NA non-coding downstream 134357 8701579 ~ 8701918 (-)
G84305 NA non-coding downstream 245787 8589220 ~ 8590488 (-)
G84304 NA non-coding downstream 247222 8587569 ~ 8589053 (-)
G84203 NA non-coding downstream 628725 8201759 ~ 8207550 (-)
G84514 NA non-coding upstream 1247045 10087704 ~ 10090475 (-)
G84603 NA non-coding upstream 1572516 10413175 ~ 10414481 (-)
G84614 NA non-coding upstream 1633758 10474417 ~ 10477459 (-)
G84651 NA non-coding upstream 2002073 10842732 ~ 10843021 (-)
G84667 NA non-coding upstream 2310327 11150986 ~ 11151438 (-)
AMCG00021153 NA other downstream 1713784 7115420 ~ 7122491 (-)
G83864 NA other downstream 2289698 6544492 ~ 6546577 (-)
G83761 NA other downstream 4085040 4703255 ~ 4751235 (-)
AMCG00021090 NA other downstream 6117356 2677585 ~ 2718919 (-)
G83428 NA other downstream 6376896 2457001 ~ 2459379 (-)
AMCG00021249 NA other upstream 3252818 12093477 ~ 12100854 (-)
G84814 NA other upstream 3686434 12527093 ~ 12527694 (-)
AMCG00021259 diaph2 other upstream 3879205 12719864 ~ 12801586 (-)
G84952 NA other upstream 4786676 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 5029280 13869939 ~ 13917868 (-)

Expression


Co-expression Network