G84536


Basic Information

Item Value
gene id G84536
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 10227905 ~ 10262453 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU105473
TGAGaaactctttatttttctgttttcagtggTACCGATAAGGAACTAACAATAGTCATCTTAGCGTCTGCAGCTCATTGTATCATTAGAGGTTTTCAATAAACggaaaatagaaatacattgtTTCATACAGGTTTATGTTCTAATCTACAAGATATTAACtgcctcattttatttttagtcgACACCACATCATTGATGACTGTGATGTCACCATTTCACATATACCCCATGTTTTATGAGTGATTAGTCAGTCAGAGAGATTACATTTGGTAAGGCATTTTTCTGCATCCCATGTGGCACACCACACAAAGCCGTCACATGGCTTTGCCAGTTTGCATCCCAACAATTGGTGTTGATGCCAATCTGGGTAAGAATCAGGCAGGACACACAAAGCTGGTGTTTGCACTGTCGGGGGAAATGGGAAGTAAATGACCATTAGTCAATCCATCTGTCACTGCCAAGTTGATCTCTTTTGAGCCAGTGTTTCAAAAAGCCAGGTAGACCCTTACTTTGGTCAagtaatatgtgtttttttttttttttttttttccttaagaaACTACCACACATGTCCTCATCATAGCCCATGACCTCTGGCACAATCCGTTTTTATAACAATACTTTTTGTACAATGCATAAAACTGTGAAAATCAACTGAAAAGGGAACGTTTACAATATCTTTCAAAATGAACCATTTACAACGTCAATATCAATACCACTCCTGCCTGAATTGCCCTCCTTCCATGTGACTTAAAGAAGTGGTTAGCCCGAGGTTCTGGTAATAACCTTTGCCTGTTATGGATTTCGTCTTCATCATTCCCTATCAATAGAGCAGATCTATTGCTTTGGGACCCTGGGGATTATTGTGTTGATCTAATCAAGCAAACTTCTCGTCGTTGTTGGCTACGGAAGACCTTCCTCTAGGATTTGTTTCACAGATAAATGGTGCCTACAAATGCTTTGAAAACTAATGATACACAATGAAAGTTATTACCAACATTTTAAAGGGTAAATTATATGtactctcccccacccccacttaTTATGCTTTCCTCTGTTTTTGCACATTATTGGAGAGGTTGCAAGCAGGCCTATATAGTCACATTTGAttcaggaaaatatataattttccttATTTAGataatgatgaaaaatgcaGCCAGATAGTTCATAAAGGATTCTCAGGCAGTATCAGTgtcactataaaaaaaaaacctctttgttgtgttttcaatAAACCCCGAACAGCTTTCACATGGTACAGTGTATTTCCAAAACGGTTTCAAATAACAGTTCAATGCATCGTTTTAACTATTTAACTACTGGTAGGATGCCCTTACGTCATATTTGCAGAATAGTCAATTAAAAGTCCTTAACTCTtactttaacacaaacaaatgtcttacacaatatttgtatgtaaattgTGGGCTTTAGTTTCCCCATTTACCTTAAACACCAtgtgataattatttttttaataaatataaaatttaaaacCGAAACACAGCAGAGAGAACAGTTGATAACTACCTAGCTACAGCAGTTGATAGCGAAGTCATTTGTAATAAATGGAATTTATAGCCTAGGACACAGTAAACAGTACAGTGAATTAATGAACCCTGTCCCGGCAAATTAACTCAGGATCTTATTTTAAAGAGCAAGGACAGCACTATATTAAACGTATCTagctttaattaattgtaacaaCTGCATTCTAACAGCAGAGAAAGCCCTTCTAATGGAGATGGGAGAGTAGGACACAAAAGACAGAAAGGTGCTGGGAGAAAACAGAGCCCACTGGCAGACTCCTTATCCTCCCATTCACATTGTTCTAGGAAACAGTCCTATTATCTTGGACTGTGACTCGCCTTTATTTTAGGGAACATATTTTAACCCCCTTTAAAGATACAGAATGCTGATATTTGTCttataatgcaaatgcaaaggCATACATGTGGTCTGAAATGCACACTAAGATAAGTTCAAGGCAGTAGCGTTAGAAAGACAAGAAACTTACAGCAAGCATTTGCGTGCTTTTATCTTCTATCATGTGATTAACGTCTATTTTGCACAGAAAAATGGTTAGAGCAAAAGgcttatattataaataaatttaaCATTTCTTATTATACATTTGCTCCCCCCACctcaagaaaaacatttaaatctgtaaaactaatttgattttctttataaCAAATGTGTCCTTTATTTCTGCGGAGGTGCTATTATAaatacactatttgtattttattttgaagggaTTTTGTACTTTCCAAACTTAAAAAGGACATGCATAACACTCAGAGTAGAAAAATGTAAGTAGTAATTGTTTTGGGTGGCTACACAACACAAATAGCATTAGTCTGGAGAGATAcattgtaatattgttttgtgtcGAAGTAAGCTGGAAAGAACTTGCATTAACTCTCTctaatttgtgcattttaacactttttgaTGCATCTCAAAGTGCACCCGAGACACCTGCATAAATTAAAATTCTgtgcatgtaaaataatgtgtaaatgcCAAGTATTGAAACACTCAAACATACTTAATTATGTAAACCTATGTTTCTATGCTGTAAAGCATTAAAATAGGACTTCAGGAGAACACTGGCAAATAACATGCAGTGTATCTCTCTGAAACTTTCCAttgataaaaaatatgtttaaaaaacactaaatacaaGAAGAACAATCTGAAGAAAGGTTTATAATTCTTGCCCATAGTGTTACTGGAAAACATGACACTAGGTAAGATCAGCCTTGGAACAACTGATTTCAGGAAATGCTTTTGTACATAAACAAGATACAGATGTTTATGGTAAGCCATCAGTATTATGGCACTTCCTTAGtgagtgtaaatatatatgaagaCAGATAAAACGGAAGAGTATGTACAGGTCCCTTCAGGCAACCAAAACCTCATCAATGTCAATAATCtaatagtacaaatatatatatatatatatatatatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105473 True 2991 lncRNA 0.35 2 10227905 10262453

Neighbor

gene id symbol gene type direction distance location
AMCG00021227 NA coding upstream 149130 10067228 ~ 10078775 (+)
AMCG00021229 NA coding upstream 183185 10044181 ~ 10044720 (+)
AMCG00021224 NA coding upstream 198322 10016520 ~ 10029583 (+)
AMCG00021225 lrch2 coding upstream 223903 9975043 ~ 10004002 (+)
AMCG00021226 lrch2 coding upstream 280422 9947160 ~ 9947483 (+)
AMCG00021233 upp,uprt,LOC105023903 coding downstream 12036 10274489 ~ 10279151 (+)
AMCG00021232 fgf16 coding downstream 81676 10344129 ~ 10355983 (+)
AMCG00021235 NA coding downstream 119977 10382430 ~ 10422404 (+)
AMCG00021247 NA coding downstream 731331 10993784 ~ 11530471 (+)
AMCG00021245 NA coding downstream 1529785 11792238 ~ 11819570 (+)
G84535 NA non-coding upstream 2607 10225083 ~ 10225298 (+)
G84495 NA non-coding upstream 218215 10006111 ~ 10009690 (+)
G84477 LOC108440084,LOC106603334,LOC103024645,LOC105026974 non-coding upstream 349038 9864686 ~ 9878867 (+)
G84298 NA non-coding upstream 1638942 8587598 ~ 8588963 (+)
G84276 NA non-coding upstream 1669487 8555961 ~ 8558418 (+)
G84549 NA non-coding downstream 17535 10279988 ~ 10361508 (+)
G84627 NA non-coding downstream 372943 10635396 ~ 10636269 (+)
G84662 NA non-coding downstream 774128 11036581 ~ 11036826 (+)
G84665 NA non-coding downstream 876824 11139277 ~ 11139491 (+)
G84666 NA non-coding downstream 888723 11151176 ~ 11151438 (+)
G84425 NA other upstream 804486 9416267 ~ 9423419 (+)
G84301 NA other upstream 1594495 8631727 ~ 8633410 (+)
AMCG00021180 NA other upstream 2184606 8040170 ~ 8043299 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other upstream 3106668 7111997 ~ 7121237 (+)
AMCG00021133 NA other upstream 3681304 6544234 ~ 6546601 (+)
AMCG00021240 LOC107742636 other downstream 207610 10470063 ~ 10719327 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other downstream 700695 10963148 ~ 10987174 (+)
G84749 NA other downstream 1812892 12075345 ~ 12100707 (+)
AMCG00021267 timm8a,LOC107593201 other downstream 3172854 13435307 ~ 13437408 (+)
AMCG00021296 NA other downstream 3753680 14016133 ~ 14033557 (+)

Expression


Co-expression Network