G84627


Basic Information

Item Value
gene id G84627
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 10635396 ~ 10636269 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU105577
CTCCCCAGCCTGAGGCAATGTCAGCTTTGGCAACTTGCTCTTGGCATTTGTCGCACTGGCTTTCCCCTCCATCAGGCCTCCAAAAGAAGGATTGCTGTAACCATCCCCAATTTCCACTGGAGGCTTCAGCTCCGGCGAGTCATTGGGGACCTGGTCTTGCCCATCCATTGGCCTCACATAGGCCGTTGGTTTTTGCTGGACTATGCTGGGCTTGCAGTGGAGCCCAGGAGGGAAATTGGGAGTTGAAAGTCCACTTGGAATGAGGGAAGTGGAGGGGACTGGAGAATTGGATCCGTGGGATCCACAGTCTTGCTCGGGAGACTTGCCGTGACTGCTCTCTTTGTAAGTGTGTTCAACAGTAGAGGACTTGGCGGAGTGAGTGTGTCTTCTGGAGTGGGAAGAGGAAGAAGCAGGACTGGAGTCTCCTTTATGTAGGTCACCCTGGCTGTTGAACAGGTCCTCATATCTGCTCTGGGACGGCTCGTGGGAAGAACTGTTGTGCTTTGCTCTGCTGCACTGCTGCCCACCGGCCTGGCTGGGCTGCCCACTGGCTGAACTGTGGGTTCCCCGTGACCAGTCTGTGGAACGGGACTTCTTGGCCCCTTGGTGGCCATGCAGCATTGTAGAGCTggacagagaggcagaggaagGAGGGGGCATGGTGGTGGTAGCATGCCCAGTGCTCTGGTGCGAAGGTGGCATTCTGTTCCTTTGCCCTTCTGAGAAGAAACTCTGCTGATCGGTCTTTTCCACCGGAGTCTGTGGGATGGAGTTTTTGGGGATGCCCACCAAATGGCTCTGGTTGGAGTGATTGGTCAGCAGGTCCTTCATTTCATCATAGTTTCCCAAGGTGTTCTGGACACGGTTTGCCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105577 True 874 lncRNA 0.55 1 10635396 10636269

Neighbor

gene id symbol gene type direction distance location
AMCG00021235 NA coding upstream 212992 10382430 ~ 10422404 (+)
AMCG00021232 fgf16 coding upstream 279413 10344129 ~ 10355983 (+)
AMCG00021233 upp,uprt,LOC105023903 coding upstream 356245 10274489 ~ 10279151 (+)
AMCG00021227 NA coding upstream 556621 10067228 ~ 10078775 (+)
AMCG00021229 NA coding upstream 590676 10044181 ~ 10044720 (+)
AMCG00021247 NA coding downstream 357515 10993784 ~ 11530471 (+)
AMCG00021245 NA coding downstream 1155969 11792238 ~ 11819570 (+)
AMCG00021244 NA coding downstream 1208240 11844509 ~ 11847471 (+)
AMCG00021254 NA coding downstream 1470045 12106314 ~ 12107507 (+)
AMCG00021248 NA coding downstream 1494926 12131195 ~ 12143466 (+)
G84549 NA non-coding upstream 273888 10279988 ~ 10361508 (+)
G84536 NA non-coding upstream 372943 10227905 ~ 10262453 (+)
G84535 NA non-coding upstream 410098 10225083 ~ 10225298 (+)
G84495 NA non-coding upstream 625706 10006111 ~ 10009690 (+)
G84477 LOC108440084,LOC106603334,LOC103024645,LOC105026974 non-coding upstream 756529 9864686 ~ 9878867 (+)
G84662 NA non-coding downstream 400312 11036581 ~ 11036826 (+)
G84665 NA non-coding downstream 503008 11139277 ~ 11139491 (+)
G84666 NA non-coding downstream 514907 11151176 ~ 11151438 (+)
G84668 NA non-coding downstream 533425 11169694 ~ 11169893 (+)
G84681 NA non-coding downstream 808562 11444831 ~ 11445150 (+)
G84425 NA other upstream 1211977 9416267 ~ 9423419 (+)
G84301 NA other upstream 2001986 8631727 ~ 8633410 (+)
AMCG00021180 NA other upstream 2592097 8040170 ~ 8043299 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other upstream 3514159 7111997 ~ 7121237 (+)
AMCG00021133 NA other upstream 4088795 6544234 ~ 6546601 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other downstream 326879 10963148 ~ 10987174 (+)
G84749 NA other downstream 1439076 12075345 ~ 12100707 (+)
AMCG00021267 timm8a,LOC107593201 other downstream 2799038 13435307 ~ 13437408 (+)
AMCG00021296 NA other downstream 3379864 14016133 ~ 14033557 (+)
AMCG00021292 NA other downstream 3433061 14069330 ~ 14073125 (+)

Expression


Co-expression Network