G85003


Basic Information

Item Value
gene id G85003
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13751206 ~ 13755469 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU106048
ttttaattaacacacatcaatccttcattaaaaaaaaagtgataagtaaataagagaaaatatacataatcaCAGTGTTATTACAAAGCAAAGTGAAGTTAAATCAAATTTCCatcagtgatatatatattttttttcagtattcctctctctctctctctctttcatttgctttaacaatataaacaattacaaattgtCCGTAAATTGGTTTTGCATTGAGACTCATAATTACTGTACATGTTACTTTTGGTCACTAGCGCTTTTATGTTCAACACCTGGACTGAAAAATCCTGAGCCATAGGTGTAATCCAGGACAGTGGTGATTACATTAAAGGGTGATAAGAGGACATGCCAATGGTCAAGCAGAAGACCCTTTCTTCAAAAGAAGGTTCTAGCAGGAGCTAagaatgcaggaaaaaaaagtctccCTTAGAAACCCTGCCAGCGAGTCAGTACGTTTCTATCAATGCCAAACCATCTGAGGCAcgtgtgtttttcttatgaCGAAGCTTACCAGGCATGATTGCTAGAAACCAGCGAAAGAGCTTATGCACCCTGGAAAAGATTACCCtccccccaaataaaaaaacacattgaaaaattCTTACTCCTTACTCCATCccagtatttcaaaataaaatagcaaaatCTTTATCATCAAGACAAGGCTATCAGAAACACATGGCTATTTCTACCGCATATCTCTCTTCCCTCCATCTGCTAACACGTCAGGTCAGATCTGAGAAGGAAGAATGGGTCACAAACACTCCCACTGCAAGCTAAGTGAGAACACTTGAGGCATGATGGGACAATGTCACACTAGGTCAGTATCTACACTTTCTTACCAATTGTTTCAGCCACTTCCTGTGCACGCGCAGTGCACCACTTTTACTGGAACAAATGCTACAGTCCTACAATGCAATGGTGCTTGACAACAATGGAAATGAGAAGGTAAAATGTTCAGCACTGTTGGACAGTCAatctagcttttttttttttttttttttaagtgactgaaatatatttgaactTAATCTAAATAACACCATTATTTACCAGCCTGCGTTTCTGTGCATATGACAATATCAGCAAAAACCTCACAGGAATCCAAAGTATATCTTAACACATTATCGACAGAAATTATCCACCATCACATTCAAGGTTTGTACAAACAAGCCAAACCCCTCAAAAAGAGATAATGGCAAcgcaacaaaacacacaacccaaTGAAGTCAGATTTCCATTGGCGAATGAATTAGAGTAACATTTTGTAGCCATTATCTACCAAGTCCAAAGGCAATAACATTGCAGTCTGGGATCGCTCTCAGTTgagtgtgacattttaaaagttttgtgGGGGGAGAGGTATTGAATTTGATTACAAAATGGCCTCTGTCACACCTCAAAATAGAGACTGCTGTAGTTGCTTGACAACAGGCAGTGTCCTTgagctatttattattttttttaataatttctgaCCAAGTATGAGAAATTGCCCTCAGTCACCAGCTCAGACATCTGCATAAAGGTCTTCAAAGTGATGGAGAGCAGAAAGCTAGAAGAACCTTCTAGAACGAGCTGGACCCCTCACACTGAACCAGGCTCTTGGAATTTAATGGCACAAATCAGAAAGGCCTAAAGGAACACTCAGAGTCAGAGAGCATGTAACCACTCTCCTGTCTTACTGCCAATTCTCTGGTTTTCACATTTTTCCCTTGCCTTTCTTTGTCGGAAtcaaatggcttttttttttatataataataataaaaaagggtcacattattccatttaatGTCccagatatacattttatttttcctttagggGATTTCCAAACTACTACCGAGAAATGTAGTTGCTCGGCTTCTTCGCAAATGGCCTCAATCGCATGTGATAGTGCAGCTTTTAAATAAGGCACAGTTACTAAAGTCTAAGgtctaaagaaacaaaataaaattcccCTTCAACAAAGCAATGTTAGGCTTTACACAGTCACCCACAAAATGGAGCGTGGGATCTGCAGGATGTTTTGTGGGCAGTGCACTATGGCAGCCAGAGTCTTTCTTGTAGTGGGAGCTGGTGATGAAAATCAGGTGTTTTCCAAGACCTGATAATACCTTTAAATTTTCCTCAAGTTACATCTATCAAGCATAGAAACAAATCTGGAAAGTGCAAGGAGCAGAATGTCAAGCAAAGAAACATTGGGCTAAAGGCTCAATGTACCTAGAACTGGAAGTAAATTACAGcacattcagttcaattcaaggAACCTTAGTTGTGAGTCCAGGCAATTAAGTTGTGCTCTGTGGgggacacacaaaacacaggcaTTACCagataaagaaaatcaaacctGTTCTACACTTCACCTCAAAGCAGAACCCTCTCCAACACAGAAACCACAGTTCTTGCAATCTCTAAATTCATTTTTACTTCAATTTAAACATGGCTTTCAGATCATAATGCTACTCAAAAGATGATGTTAACTCACATCCCTGTCTCCATCCCACTTACCACTGcctattttctttaatgtaagAAGCATGTGTgcgatttaaaaaacaaattgcatagGGGCTTTAGGTATAGTAGATGAAGCGGTCAATCATATGAGCCTTATATTATAAGCATAAACAGGCCCAGGAGGAATATTGTCATGAACTCTAGACCAAGAGTAACTTAGATTGGCCATTGCGTGTAAaggtaataatacaaaaaattaaatttaaaaaacaaaaacaaaaacaaaaaatcattcaaaaacagtaaCAATCAATACTTCAGAACAAGCACTTGGTCAGTGCTGTGGAGTAGCCTTCTGCTCCTGGGATATTCCTAACAAAGAATCTGAGTATTTTCAGTTCTTCTTCTTTCCTCAATGGTGTCCCACATGGTTGAGTTCGAGGGAATACACACCTCATGATGACCGCTGGGCCCAACTTCATATCCCAGGGCTCTGCATATCAAACAAGCCTGCGCTCCACTGTACAGAAAGAACAGCAGGACAGAGCGATTCTGCTCAGCAGTTTTAGGGTTTTGCCAAATGGGCGGAATGATGTGAACAGACTCATGGGAGTTCTTCAGTTTGTTCGTTTGTCTGGACTGCAAAAGCATACGCTTTCCTTATAAGGgtgttgtcttttctttttttctctgtgtggttTTTGTCCATTTGCGTAGACTTCAAAAGCAGCAGATAGTTTGTGACGTTTAAtactgtagtagtagtagtagtagtagtagtagtaatccATCCTGGAGTCTCTCCTCCGGGTGTCTGGAGTTAGCAGGACTTTTCCTTAGAGGAGGCCATTTCTCCGCTGTCCCCCAGCGTAGCAGGGGGAGCATCCTTGGCCGAGGGGCTGTCTGCGGGGCTCTTCTCGGGTGAGGCTGCTATGCTGGGCTTGGCGTCGTCAGGGGTGTGCTCATTGGGGATGAGGGGTGCCGTGGTTTAGTATTCTGTGGGTCTGGGTTGTTGGTCTTAGCGGGAGGAACTGGGACCGGAGGGTTGGAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106048 True 3523 lncRNA 0.40 3 13751206 13755469

Neighbor

gene id symbol gene type direction distance location
AMCG00021287 LOC106611794 coding downstream 26558 13717973 ~ 13724648 (-)
AMCG00021291 NA coding downstream 37212 13705861 ~ 13713994 (-)
AMCG00021286 LOC107378166 coding downstream 60034 13680903 ~ 13691172 (-)
AMCG00021289 NA coding downstream 72131 13677782 ~ 13679075 (-)
AMCG00021278 cstf2 coding downstream 128594 13612442 ~ 13622612 (-)
AMCG00021285 NA coding upstream 226 13755695 ~ 13771411 (-)
AMCG00021288 NA coding upstream 19570 13775039 ~ 13787257 (-)
AMCG00021284 NA coding upstream 125671 13881140 ~ 13896275 (-)
AMCG00021290 NA coding upstream 141424 13896893 ~ 13924592 (-)
AMCG00021301 NA coding upstream 175367 13930836 ~ 13938158 (-)
G84822 NA non-coding downstream 1087887 12663009 ~ 12663319 (-)
G84812 pcdh19 non-coding downstream 1247704 12500240 ~ 12503502 (-)
G84785 NA non-coding downstream 1548379 12198777 ~ 12202827 (-)
G84780 aifm1 non-coding downstream 1607843 12141960 ~ 12143363 (-)
G84778 NA non-coding downstream 1618049 12131302 ~ 12133157 (-)
G85009 NA non-coding upstream 81118 13836587 ~ 13837073 (-)
G85012 NA non-coding upstream 102835 13858304 ~ 13862544 (-)
G85044 NA non-coding upstream 174373 13929842 ~ 13930281 (-)
G85058 NA non-coding upstream 210467 13965936 ~ 13966910 (-)
G85059 NA non-coding upstream 212666 13968135 ~ 13968382 (-)
G84952 NA other downstream 123459 13627335 ~ 13627747 (-)
AMCG00021259 diaph2 other downstream 949620 12719864 ~ 12801586 (-)
G84814 NA other downstream 1223512 12527093 ~ 12527694 (-)
AMCG00021249 NA other downstream 1650352 12093477 ~ 12100854 (-)
AMCG00021153 NA other downstream 6628715 7115420 ~ 7122491 (-)
G85037 LOC100846954 other upstream 114470 13869939 ~ 13917868 (-)
AMCG00021302 NA other upstream 192838 13948307 ~ 13951044 (-)
G85115 NA other upstream 294505 14049974 ~ 14051897 (-)
AMCG00021304 NA other upstream 302449 14057918 ~ 14071325 (-)
AMCG00021387 NA other upstream 2478848 16234317 ~ 16242655 (-)

Expression


Co-expression Network