G85006


Basic Information

Item Value
gene id G85006
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13861670 ~ 13862498 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU106054
AAGCATGGGTCGCTGTCTCTTAATGACGCATCAGCCTCGAGAAAGAAAACCATCTTGCTGGTGCCAAGTTGTTTTTTGGGAGCTTGGGTGAAGCCGCAACTCTGAAAATCCACTATGAAAGGCTTCTTAtcagtttttgttattttgttagtttgtttcaaTAACGCCACGGGTATTTGTCTTGAGAATGACAACGAAAAGAAGTGCATGTTACACATTCgattttatttatacagcatGTCCAGTATGGTCTCAGCACTCATTTTCCATCAAAATCTTATAGCTGTAACTGCCCATTTATCTATAGCTCAGCCATCCACAAGTTAACCAGATTGGGTGCCCTGAAAAAATTACAGAAGGCTGAGGGCTTCCCTAGTTAAGACGGACCAGCCCTGCTCGATCACTGTAATTCAGTGTATACTCCTATAgcctgtaaaatatgtatgccACAGTATAAAGTGTTCAAGAACTATGGAAGACCTGCACCCACCTACTGTCTGACCAGTAATAGTATATTACAAAACTATCAAAGACATTGTGTATTGCTCAGTCTCTCATTTCTCTTGTTATCAGGTGGCTCACATCTCTGTTTTGGTATTTCCCGCCTGGCCAAATGTACAGTCTCTGTTTGATGTTGAACTGGGCAAAGTGTATCAGAAATGGTCAAATACTGTGTACATATTTGAACTTTTGGTTTCTAATTTATAAAAGATAAGCTTTAGCTCTTGGAgtacttattattatgattattatgattatgattattattatgtttatgattattttattttctttcatgcgtagctttgtgttttttattttctatttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106054 True 829 lncRNA 0.37 1 13861670 13862498

Neighbor

gene id symbol gene type direction distance location
AMCG00021281 NA coding upstream 11213 13848232 ~ 13850457 (+)
AMCG00021280 zdhhc9,LOC105893011 coding upstream 109521 13731696 ~ 13752149 (+)
AMCG00021279 NA coding upstream 157580 13693368 ~ 13704090 (+)
AMCG00021275 NA coding upstream 199201 13650263 ~ 13662469 (+)
AMCG00021276 NA coding upstream 231200 13622849 ~ 13630470 (+)
AMCG00021282 clic2,LOC106611523,LOC102778350 coding downstream 79489 13941987 ~ 13947771 (+)
AMCG00021283 cul4b coding downstream 85984 13948482 ~ 13982728 (+)
AMCG00021297 NA coding downstream 124626 13987124 ~ 13996608 (+)
AMCG00021294 nkap,LOC106611517 coding downstream 178942 14041440 ~ 14047801 (+)
AMCG00021293 NA coding downstream 190721 14053219 ~ 14055981 (+)
G84962 NA non-coding upstream 176425 13680937 ~ 13685245 (+)
G84938 NA non-coding upstream 257511 13603858 ~ 13604159 (+)
G84936 nox1,LOC106611713 non-coding upstream 259742 13600205 ~ 13601928 (+)
G84923 NA non-coding upstream 289223 13571771 ~ 13572447 (+)
G84837 NA non-coding upstream 799907 13056182 ~ 13061763 (+)
G85013 LOC100846954 non-coding downstream 7064 13869562 ~ 13917871 (+)
G85019 NA non-coding downstream 34421 13896919 ~ 13899981 (+)
G85056 NA non-coding downstream 100611 13963109 ~ 13964224 (+)
G85069 NA non-coding downstream 138098 14000596 ~ 14002419 (+)
G85090 NA non-coding downstream 171717 14034215 ~ 14035662 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 424262 13435307 ~ 13437408 (+)
G84749 NA other upstream 1760963 12075345 ~ 12100707 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other upstream 2874496 10963148 ~ 10987174 (+)
AMCG00021240 LOC107742636 other upstream 3142343 10470063 ~ 10719327 (+)
G84425 NA other upstream 4438251 9416267 ~ 9423419 (+)
AMCG00021296 NA other downstream 153635 14016133 ~ 14033557 (+)
AMCG00021292 NA other downstream 206832 14069330 ~ 14073125 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other downstream 1565979 15428477 ~ 15432364 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 2201001 16063499 ~ 16073621 (+)
G85764 LOC103366846,LOC106930986 other downstream 2727683 16590181 ~ 16592973 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G7475 NA non-coding CI01000000 null 12085338 ~ 12108070 (+)
rainbow trout (Oncorhynchus mykiss) G2283492 NA unknown NC_050571.1 CM025858.1 40971126 ~ 40975247 (-)
striped catfish (Pangasianodon hypophthalmus) apln apln misc NC_047601.1 CM018547.1 15517054 ~ 15540726 (-)
bowfin (Amia calva) G109091 LOC103376870 non-coding CM030134.1 CM030134.1 2350754 ~ 2356238 (-)
tiger barb (Puntius tetrazona) G180998 NA non-coding NW_025047965.1 JAEQBD010000310.1 23222 ~ 25620 (-)
mexican tetra (Astyanax mexicanus) G212716 NA non-coding NC_035920.1 CM008323.1 46266686 ~ 46272903 (-)