G85013 (LOC100846954)


Basic Information

Item Value
gene id G85013
gene name LOC100846954
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13869562 ~ 13917871 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU106064
attttaacagtgagagacagaataacaacaaaaaaaatccagaaaaacgcatttcaaaaaagttatacattgatttgcatgttaatgagggaaataagtatttgaccccttcgacttagtacttggtggcaaaacccttgttggcaatcacagaggtcagacgtttcttgtagttggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggtttcgaggctgacgtttggcaacttgaaccttcagctccctccacagattttctatgggattaaggtctggagactggttGGCTAGGGactgtcctgtccccttagctgaaaaacacccccaaaccataatgtttccacctccatgtttgacggtggggatggtgttcttggggtcataggcagcattcctcctcctccaaacacggcgagttgagttgatgccaaagagttcgattttggtctcatctgaccacaacactttcacccagttctcctctgaatcattcagatgttcattggcaaacttcagacgggcctgtacatgtgctttcttgagcagggggaccttgcgggcgctgcaggatttcagtccttcacggcgtagtgtgttaccaattgacatccttggacagctctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacaggtgtcttttatacaggtaacgagctgagattag

Function

NR:

description
transposase-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106064 True 761 lncRNA 0.46 2 13869562 13917871

Neighbor

gene id symbol gene type direction distance location
AMCG00021281 NA coding upstream 19105 13848232 ~ 13850457 (+)
AMCG00021280 zdhhc9,LOC105893011 coding upstream 117413 13731696 ~ 13752149 (+)
AMCG00021279 NA coding upstream 165472 13693368 ~ 13704090 (+)
AMCG00021275 NA coding upstream 207093 13650263 ~ 13662469 (+)
AMCG00021276 NA coding upstream 239092 13622849 ~ 13630470 (+)
AMCG00021282 clic2,LOC106611523,LOC102778350 coding downstream 24116 13941987 ~ 13947771 (+)
AMCG00021283 cul4b coding downstream 30611 13948482 ~ 13982728 (+)
AMCG00021297 NA coding downstream 69253 13987124 ~ 13996608 (+)
AMCG00021294 nkap,LOC106611517 coding downstream 123569 14041440 ~ 14047801 (+)
AMCG00021293 NA coding downstream 135348 14053219 ~ 14055981 (+)
G85006 NA non-coding upstream 7064 13861670 ~ 13862498 (+)
G84962 NA non-coding upstream 184317 13680937 ~ 13685245 (+)
G84938 NA non-coding upstream 265403 13603858 ~ 13604159 (+)
G84936 nox1,LOC106611713 non-coding upstream 267634 13600205 ~ 13601928 (+)
G84923 NA non-coding upstream 297115 13571771 ~ 13572447 (+)
G85056 NA non-coding downstream 45238 13963109 ~ 13964224 (+)
G85069 NA non-coding downstream 82725 14000596 ~ 14002419 (+)
G85090 NA non-coding downstream 116344 14034215 ~ 14035662 (+)
G85098 slc25a5,LOC107378486,LOC104931197,LOC107748177,LOC105925769 non-coding downstream 191656 14109527 ~ 14152543 (+)
G85185 dlg3 non-coding downstream 454849 14372720 ~ 14373557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 432154 13435307 ~ 13437408 (+)
G84749 NA other upstream 1768855 12075345 ~ 12100707 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other upstream 2882388 10963148 ~ 10987174 (+)
AMCG00021240 LOC107742636 other upstream 3150235 10470063 ~ 10719327 (+)
G84425 NA other upstream 4446143 9416267 ~ 9423419 (+)
AMCG00021296 NA other downstream 98262 14016133 ~ 14033557 (+)
AMCG00021292 NA other downstream 151459 14069330 ~ 14073125 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other downstream 1510606 15428477 ~ 15432364 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 2145628 16063499 ~ 16073621 (+)
G85764 LOC103366846,LOC106930986 other downstream 2672310 16590181 ~ 16592973 (+)

Expression


Co-expression Network