G85069


Basic Information

Item Value
gene id G85069
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14000596 ~ 14002419 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU106138
atatatatatatatatatatatatataatgtctaaAAAGCCATATCATTGTTAAATACTTGTATCAAAAGTTAATTtgtcaatcaaacaaaaataaataacaagatccataaatgtaatttctgtaccaaaataaaaaaatgataatgacCTGTTCACTACATTACAGATAATGGTGACATATCCTGCTGTAAGTGGCTTTTTAGTGTGATCCAGGTATTGGTAGAAGGTCATAGTTACTACAAtactacattttgtatttatattcttaaaataaatccaaacaaTAGGGCTGTTGCAACCTTTCTAACAAAATACTGCTGCACTGTATCCAGAACTTACACAGATTTAACTACTCATAATGAGCTCTCTCAGACTGTTTCAGCAGCTGTTTAGTAATGCAATGACCACAGTGCTAGTTGTTTTGTCAATGTCATATACTATGGAATAAAGGCACATTAATTATGACTTTAAGTAAGCCAGAGAATAAGGAGTGTTCTGACACTTTGAAGTGGTATATAATTATGCTACAtccattattaatgttatgCTTTAGAGCAAGAAGAGAAACGcatgaaataaattacaaggACATTACAATTCCCAAGATTGACGGCTAATACAGAGATGGGAATCTGCTGTTAATCGGGTGAATTATTTTTACTGTTGCATACTAACTGCAAGAAATTAACTGATCTGTAAATAAATCCAGAGACATTTTGACTAAATACTACAGAGAACAGTATTTTtagaagtattttatttctatacCTTTTCTAATCAATTTGTAGCCTtagtgtttctttctgttttcttctctaGCTTACCAACTCAGTTATTTGAGCGGAAGTACACATTGGTGGAAACAGATACACTTACAATAGAAGATGCTAATGCACTGCGGACTTTCAAATGATGAGATAGACTACAATACCCTGACAATAGTTTTTTCAgtcttaacattattattaatattattatgaatgtgcATGGgcattattttacagaatgaaTATGATTTTGTGACAAAAAGCGCTAGTGTAACTGCAGTAGGCCAATATGTATGCCTGAATACCACTGGCTAATGAATGACATTAGATCATTAGTGCCCATTGGCCCTTATTCTACTGACTGTGTTCTGAGAGCATCAGATACAATGTTATCTGTTGATATAAGTCACGGTAGCTTTCACTAGTGTATTAATGTTGTAGATCGTTTGGTGTGTAAAAtgtgggtttgtttgtgtgtctgactTTTTCctaaacaagaaataataatatatagcgGTGAGATGATGGCTGTGGACCAGTGCTACGCATCCACTGCCAATCCTCCTGGGTGAATCTCCGTGTTTTTcctttcacaatgtttttttcttcactgtatCACTCCGTCTGCTGTGCACGGCCTTCAAGACGGTGGCGGCCCTACTCGCCTCCCATCAATAACCGCCGACCTTGAGTGTGAAGGTGATCCTGCCAAGGAAGCGATCTTGCGGGGAGTCATTGATGATGCCTTTGCCGTTCAGCTTGCACTGGACAGTGAGAGGGGTGTCGGTTTTCAGGTTGGGAAACTGAACGGCCACCACTGGGGATGTGTAGTTCACCTGCGGGGCATGTCTCAGCTTTCCG

Function

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106138 True 1630 lncRNA 0.37 2 14000596 14002419

Neighbor

gene id symbol gene type direction distance location
AMCG00021297 NA coding upstream 3988 13987124 ~ 13996608 (+)
AMCG00021283 cul4b coding upstream 17868 13948482 ~ 13982728 (+)
AMCG00021282 clic2,LOC106611523,LOC102778350 coding upstream 52825 13941987 ~ 13947771 (+)
AMCG00021281 NA coding upstream 150139 13848232 ~ 13850457 (+)
AMCG00021280 zdhhc9,LOC105893011 coding upstream 248447 13731696 ~ 13752149 (+)
AMCG00021294 nkap,LOC106611517 coding downstream 39021 14041440 ~ 14047801 (+)
AMCG00021293 NA coding downstream 50800 14053219 ~ 14055981 (+)
AMCG00021295 upf3b,LOC102779784 coding downstream 61553 14063972 ~ 14068392 (+)
AMCG00021306 sept6,LOC106611514,LOC107664349 coding downstream 78131 14080550 ~ 14105940 (+)
AMCG00021305 NA coding downstream 108039 14110458 ~ 14117266 (+)
G85056 NA non-coding upstream 36372 13963109 ~ 13964224 (+)
G85013 LOC100846954 non-coding upstream 82725 13869562 ~ 13917871 (+)
G85019 NA non-coding upstream 100615 13896919 ~ 13899981 (+)
G85006 NA non-coding upstream 138098 13861670 ~ 13862498 (+)
G84962 NA non-coding upstream 315351 13680937 ~ 13685245 (+)
G85090 NA non-coding downstream 31796 14034215 ~ 14035662 (+)
G85098 slc25a5,LOC107378486,LOC104931197,LOC107748177,LOC105925769 non-coding downstream 107108 14109527 ~ 14152543 (+)
G85185 dlg3 non-coding downstream 370301 14372720 ~ 14373557 (+)
G85202 NA non-coding downstream 454209 14456628 ~ 14495849 (+)
G85344 NA non-coding downstream 1124348 15126767 ~ 15127233 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 563188 13435307 ~ 13437408 (+)
G84749 NA other upstream 1899889 12075345 ~ 12100707 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other upstream 3013422 10963148 ~ 10987174 (+)
AMCG00021240 LOC107742636 other upstream 3281269 10470063 ~ 10719327 (+)
G84425 NA other upstream 4577177 9416267 ~ 9423419 (+)
AMCG00021296 NA other downstream 13714 14016133 ~ 14033557 (+)
AMCG00021292 NA other downstream 66911 14069330 ~ 14073125 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other downstream 1426058 15428477 ~ 15432364 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 2061080 16063499 ~ 16073621 (+)
G85764 LOC103366846,LOC106930986 other downstream 2587762 16590181 ~ 16592973 (+)

Expression


Co-expression Network