G85202


Basic Information

Item Value
gene id G85202
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14456628 ~ 14495849 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU106330
tttatttaataTTCACCTTCACATTCCTCCCTTATAGGTGGGGGGTAGAGTGAGAAAACCCAAATATAGGCACTTACATAAGCTGCAAACTGTGGCACACAGAAAACAGGCCTGGCTGCATTCTTACTGGCAGTTTCGAAGGAAGGACAGGGTTTTCATTGTAACCTTGCCTGAGCTGCTTCTCTCAGCCCCACTCATTTTCACTTCACTCAAGACAGGCATAACACAACCACTAACTGATTTAAAGCCATCTTTGGCACTACAATTTAAAGCTACAAACAAGTCTAACCTCTCCTAACTTTAACACCCTTTTAGGTTGTAGATTTTCATGTGATGTGTGTTTTTGGAAAGAAGAACACCCACCCCATTGTAATGAAATATGGCAAGCCTTtccaaattgtttttgttgtatttacagaaatcattatataaaaaaaaataaaaataaaacgacACCAGCTACAGTCTGAAAACACTTGGTTTCCAACTCTGCCACAGGGCATAGGGTGTCTAATACAGTTCTTTAGCTAGCTAAAATCAAATGCCAGGTTTCCACATACTCTATTCTTAAAGCACCACTTTGGAATTTCTGTGAAGCATCATCCAAAATGTGACCAGATTGGTCACATCAAGGTTGCAGTAGGTCTGTGCACTCAGCTGCTGAAAATACTCTTAAAATGCTCACATGACACCAAGATAAGAAGGCACAGTCAGTATATGCACAGGGGGACTGGCTTTGCTCCACTTCTCTTCATTCTCATCAGCTCTGAGAGAAGAGAATAGCTTCACAGCAGGCCTGGTGGTTAATTACAGCATTCAGGACTCCCATCGAGATTTTAAGTACAAGGACGTTTATAAAAGCAGCTTCATTATGGTATGGCCACAAGTGCAAGGATGCAAATTTTGGCCATGAATATACTTCATTAGATTGCAAGGCACTTAAATGGCTCAGTCTGACAAACAAGGAAAGTTAAaggcccagattaaatccaTTTCTAAGTTTACAAATTTCAAAGAACGCTCGTTTCGTTTGCCAAGGGCACCTAAAACTATTCATTTTGGAATTTGCGAATGGCTGGCAAGTCAAGGTTTGGGCCAAagttttacatatatacaattggtactaattattttatatacacacaaatgagATCCATGCATTTTAAAGACTGTAAAATAGATTAATACTTCAGTGTCCTTACAATTACTTTCCTTGGTAATTAACTTCCTACAAGCTAGTTTTACAAAAAAGAAGTGCTAAACTGTCATACTGAAAAAGCTAGAATTAAGAGGAATTcgattttgttttagttttttttttttgtttttgtttttttaaagctaaaaaataaatattctaaaataGTAAAACTATCCATTCCCCAGCTTTTACAAAATACACTTGTTCATCatggggaaaaatataaataaaatgaagtgagTTTAAACAGGCTCAAACACATTAAACAAGGGCCTGAAACCCTGGTAAATCCGACAGTGTCCGTGAACTGGTGGCTTCCACTGCTAAGAGAGTTGTACAGGTTCTCAATAGCGCGGGCAGCCGTGTGCAAGATCGGAGCAACgcccctccccatctctctcttcaGCCGCTGTCCTCGGCTTCGTCGTCCCGGTTCTCCCTCACTCCGCTTTCGTCCACGTTCTCTAGGGACTCTCCGCGCTGGATGGCCAGCTCCGACACCTCCATCAGCGGGAGGTCACTCTGCTCCGGGTGGTACCAGGGCTTCTTGTCCGGGGAGTTCTGCCTCTTCCAATCTGGGTACATCTGTCCAGCCTTGTGCACACTTCTCATCACCTGAGACACGCAGATGGAGAGAGAGTAAGGAGGGTGAACCAGTGCTGTATGC

Function

GO:

id name namespace
GO:0005911 cell-cell junction cellular_component
GO:0005921 gap junction cellular_component
GO:0005922 connexin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106330 True 1868 lncRNA 0.41 2 14456628 14495849

Neighbor

gene id symbol gene type direction distance location
AMCG00021317 NA coding upstream 116672 14321885 ~ 14339956 (+)
AMCG00021312 NA coding upstream 258956 14179178 ~ 14197672 (+)
AMCG00021305 NA coding upstream 339362 14110458 ~ 14117266 (+)
AMCG00021306 sept6,LOC106611514,LOC107664349 coding upstream 350688 14080550 ~ 14105940 (+)
AMCG00021295 upf3b,LOC102779784 coding upstream 388236 14063972 ~ 14068392 (+)
AMCG00021323 NA coding downstream 36933 14532782 ~ 14552790 (+)
AMCG00021324 NA coding downstream 62280 14558129 ~ 14561490 (+)
AMCG00021329 sox2,sox3,LOC105029621,LOC106604738 coding downstream 99431 14595280 ~ 14596188 (+)
AMCG00021331 atp11c coding downstream 175403 14671252 ~ 14690119 (+)
AMCG00021330 NA coding downstream 200738 14696587 ~ 14731003 (+)
G85185 dlg3 non-coding upstream 83071 14372720 ~ 14373557 (+)
G85098 slc25a5,LOC107378486,LOC104931197,LOC107748177,LOC105925769 non-coding upstream 304085 14109527 ~ 14152543 (+)
G85090 NA non-coding upstream 420966 14034215 ~ 14035662 (+)
G85069 NA non-coding upstream 454209 14000596 ~ 14002419 (+)
G85056 NA non-coding upstream 492404 13963109 ~ 13964224 (+)
G85344 NA non-coding downstream 630918 15126767 ~ 15127233 (+)
G85345 NA non-coding downstream 631440 15127289 ~ 15127965 (+)
G85380 NA non-coding downstream 760599 15256448 ~ 15260965 (+)
G85381 NA non-coding downstream 762110 15257959 ~ 15259462 (+)
G85412 NA non-coding downstream 909927 15405776 ~ 15410610 (+)
AMCG00021292 NA other upstream 383503 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 423071 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 1019220 13435307 ~ 13437408 (+)
G84749 NA other upstream 2355921 12075345 ~ 12100707 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other upstream 3469454 10963148 ~ 10987174 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other downstream 932628 15428477 ~ 15432364 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 1567650 16063499 ~ 16073621 (+)
G85764 LOC103366846,LOC106930986 other downstream 2094332 16590181 ~ 16592973 (+)
G85787 NA other downstream 2160795 16656644 ~ 16714038 (+)
G85869 NA other downstream 2502028 16997877 ~ 17004131 (+)

Expression


Co-expression Network