G85543


Basic Information

Item Value
gene id G85543
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15863731 ~ 15903367 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU106771
CTAGGGGGGGGCTCTGGAGCAGGCCGGACGCCCGCTGGTGAGTGACTTTAGAGATGATCAGGCCGCCGCAGTCAAGAGGGCCCAACGTGGAGGAGCCGAGCTGTGGACACAGCCGGTCATGGCACTGTCAGAAATCGTGTTCTCTCTTCTCCTgggtctccctctctctctttgtctctcctCCAGCACTctcagtctccctctctctgtcttttatGCTTTGTAGTCCTGCTTCATCACtaccctttctctttctcctcctctctcactcgTCACCACATACACCACCCCATGTTGATAATACTGGTTACATCATGTTAAATTCAcccctctttaaaaaaaaaaaaaaaaaaaaaggggggaaaaaa

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0008213 protein alkylation biological_process
GO:0043414 macromolecule methylation biological_process
GO:0006479 protein methylation biological_process
GO:0016569 covalent chromatin modification biological_process
GO:0016570 histone modification biological_process
GO:0016571 histone methylation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106771 True 368 lncRNA 0.51 2 15863731 15903367

Neighbor

gene id symbol gene type direction distance location
AMCG00021355 LOC107751967,LOC107560772,LOC107661382,LOC107658087,LOC107601119 coding downstream 328597 15528669 ~ 15535134 (-)
AMCG00021357 hprt1,LOC105912559,LOC107601120 coding downstream 337548 15515619 ~ 15526183 (-)
AMCG00021356 NA coding downstream 374334 15480851 ~ 15489397 (-)
AMCG00021352 ddx26b,ints6l,LOC107601122,LOC107560701 coding downstream 401681 15434040 ~ 15462050 (-)
AMCG00021351 slc9a6 coding downstream 437081 15407884 ~ 15426650 (-)
AMCG00021376 NA coding upstream 98852 16002219 ~ 16008079 (-)
AMCG00021382 rab39b,LOC103034714,LOC108428007,LOC108278912,LOC106602960,LOC106609056 coding upstream 216821 16120188 ~ 16121592 (-)
AMCG00021388 rbmx2 coding upstream 306371 16209738 ~ 16212465 (-)
AMCG00021392 NA coding upstream 313069 16216436 ~ 16217455 (-)
AMCG00021393 LOC106603592,LOC106567886,LOC105023927,LOC107587290,LOC103395138,LOC100711063,LOC102300059 coding upstream 453898 16357265 ~ 16359007 (-)
G85535 NA non-coding downstream 1784 15804736 ~ 15861947 (-)
G85530 NA non-coding downstream 108285 15750551 ~ 15755446 (-)
G85498 NA non-coding downstream 287734 15573626 ~ 15575997 (-)
G85470 NA non-coding downstream 431360 15431042 ~ 15432371 (-)
G85471 NA non-coding downstream 479800 15381352 ~ 15383931 (-)
G85568 NA non-coding upstream 17655 15921022 ~ 15934177 (-)
G85569 NA non-coding upstream 21591 15924958 ~ 15929779 (-)
G85580 NA non-coding upstream 73198 15976565 ~ 16020742 (-)
G85590 NA non-coding upstream 89885 15993252 ~ 16001221 (-)
G85592 NA non-coding upstream 107864 16011231 ~ 16011702 (-)
AMCG00021304 NA other downstream 1792406 14057918 ~ 14071325 (-)
G85115 NA other downstream 1811834 14049974 ~ 14051897 (-)
AMCG00021302 NA other downstream 1912687 13948307 ~ 13951044 (-)
G85037 LOC100846954 other downstream 1945863 13869939 ~ 13917868 (-)
G84952 NA other downstream 2235984 13627335 ~ 13627747 (-)
AMCG00021387 NA other upstream 330950 16234317 ~ 16242655 (-)
AMCG00021412 NA other upstream 743772 16647139 ~ 16649940 (-)
AMCG00021435 hdx,LOC107572093 other upstream 1382882 17286249 ~ 17303470 (-)
G85953 NA other upstream 1516237 17419604 ~ 17423418 (-)
G86010 NA other upstream 1643795 17547162 ~ 17552766 (-)

Expression


Co-expression Network