G85569


Basic Information

Item Value
gene id G85569
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15924958 ~ 15929779 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU106806
CAGGTATACAAAACTTTAACTGTCAGAGACACTGACTCCAGGATCATGAGTACCACAAACTCAGGGGAGGCCAACCATCAGGCCTGGTGATATTGACTCACGGTAACTGTACTGCAACCGCCTTTATCTTACATTGGGGAAAACCAGTGCTCTGATTGATCGACTGTTTGAACTGCCACTCCTGGAAGCAGACATCACAGACAACACCAGCTACTGGTTGTTGCCACTTCAGCAAGTTAAAACTCCACCTAAGGATCAATGTCACAATGCACACACAGTTCCTACTGCAACAGCGTCTTCAGTGCCCCACTGGCAGACACAGGTGCAACATGAAAAGTGCTTAGACAAAGTGCTAGAGTTAAAAATAGCCTGACCCTAAGAATTTCTcttgaaaatgacaaaatacctAACAATATGCACAGTAATATGGGCAGTTAGATTCAGCTTCCTGTAACTGATTGAGCTGTCAGTTAATGAGCCTTTGACACAGAAAGAGCCTCTTCCTCCTGCTAGCTGACgagcacaaaaacacacatcctGCAACAGAGCCCCGTCTGAACTGAACGGAGGGAACATATGCCTGCATTTCTGGCTTTTCAACAAATACTGGGAGAAAGAAATATGCAGAGAtagacatgcacacaaacacagacaaaagaTGAAATATGCATGTGCACACATacaagcacacagacagagatggagagaaacaTGCaagtgcgcacacacacacacatactcagacattacacaaactcacacagacagaggagGAAATagaatcagagagagagagagagagagagagacatgaaCAAACAGGGAAACTGTAAATGTGGAAAGAACAGAGAGATGgcaagacagaaacacagagagacaagtCCGATattgacacagagacactcacagGCACGGACAGACAGagtcagacacagagagacaaccagagacacacacacacaaagacagagagaaaagacaAACAGTAAAAACACCCAGACATATccggaaacaaacacacacacacacacacacacacacacacacacacacacacgaacacttGGGGACAGACAGGGGCAGGCCGGCCAGGGGGGGCTCAGTTACCTGCAGGTGCAGTAGTGTAGGTGTCCCTGGCTGTGCAGCGCTCTGGCCAGCTCCAGCTGGTGGTTGTTCATCAGCTGATCATTGACGACCACCAGGAGGGGTCGCCCCGCTCCCAGCGTCTCCAAACAGCTCCCTGCCCCTGGGggacgggacaggacaggaggCTGCGTGGCTGATGACCAGGTCGGCGTCCCGGATGTCGTCAGCGATGGAGTCCTTGTAGCGGAAGACATGCAGCGCGATCCCCGGGCAGCCGTCCGGGCTGGGCTGCACCGAGCCGCGGCCGATCTGCAGGGTCAGTTTCTGGTAGCCCAGCGCTGTCAGAGCCTGCAGGACACGGACAGCTGAGCAATTCGCCCGACTACGTGGCCTTGCAGCACCCGACCtacgcctgtccgaccatccctCGATCACGCACTGCAATTGGGTCCCCAGCTCCCGTGCCCCGCGCATCATGACAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106806 True 1569 lncRNA 0.52 3 15924958 15929779

Neighbor

gene id symbol gene type direction distance location
AMCG00021364 NA coding downstream 54428 15862894 ~ 15870530 (-)
AMCG00021355 LOC107751967,LOC107560772,LOC107661382,LOC107658087,LOC107601119 coding downstream 389824 15528669 ~ 15535134 (-)
AMCG00021357 hprt1,LOC105912559,LOC107601120 coding downstream 398775 15515619 ~ 15526183 (-)
AMCG00021356 NA coding downstream 435561 15480851 ~ 15489397 (-)
AMCG00021352 ddx26b,ints6l,LOC107601122,LOC107560701 coding downstream 462908 15434040 ~ 15462050 (-)
AMCG00021376 NA coding upstream 72440 16002219 ~ 16008079 (-)
AMCG00021382 rab39b,LOC103034714,LOC108428007,LOC108278912,LOC106602960,LOC106609056 coding upstream 190409 16120188 ~ 16121592 (-)
AMCG00021388 rbmx2 coding upstream 279959 16209738 ~ 16212465 (-)
AMCG00021392 NA coding upstream 286657 16216436 ~ 16217455 (-)
AMCG00021393 LOC106603592,LOC106567886,LOC105023927,LOC107587290,LOC103395138,LOC100711063,LOC102300059 coding upstream 427486 16357265 ~ 16359007 (-)
G85543 NA non-coding downstream 21591 15863731 ~ 15903367 (-)
G85535 NA non-coding downstream 63011 15804736 ~ 15861947 (-)
G85530 NA non-coding downstream 169512 15750551 ~ 15755446 (-)
G85498 NA non-coding downstream 348961 15573626 ~ 15575997 (-)
G85470 NA non-coding downstream 492587 15431042 ~ 15432371 (-)
G85580 NA non-coding upstream 46786 15976565 ~ 16020742 (-)
G85590 NA non-coding upstream 63473 15993252 ~ 16001221 (-)
G85592 NA non-coding upstream 81452 16011231 ~ 16011702 (-)
G85658 pof1b non-coding upstream 249383 16179162 ~ 16266798 (-)
G85716 NA non-coding upstream 541773 16471552 ~ 16471759 (-)
AMCG00021304 NA other downstream 1853633 14057918 ~ 14071325 (-)
G85115 NA other downstream 1873061 14049974 ~ 14051897 (-)
AMCG00021302 NA other downstream 1973914 13948307 ~ 13951044 (-)
G85037 LOC100846954 other downstream 2007090 13869939 ~ 13917868 (-)
G84952 NA other downstream 2297211 13627335 ~ 13627747 (-)
AMCG00021387 NA other upstream 304538 16234317 ~ 16242655 (-)
AMCG00021412 NA other upstream 717360 16647139 ~ 16649940 (-)
AMCG00021435 hdx,LOC107572093 other upstream 1356470 17286249 ~ 17303470 (-)
G85953 NA other upstream 1489825 17419604 ~ 17423418 (-)
G86010 NA other upstream 1617383 17547162 ~ 17552766 (-)

Expression


Co-expression Network