G85580


Basic Information

Item Value
gene id G85580
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15976565 ~ 16020742 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU106817
ttgtCGGGTTTTCACAGTGGTTTAATATGAACACGATTATCTGACATTACATTTCTTGACAGCAGATCTGAGACAAcaatgccattttctttttcttttttaataaagccCAGACTTAAATTCACAGCAGTTACATATGTGAAAAGGTGgctaaataataaaaggatacgaatatatatttatataaggaTCATGTAGTAACAGCATGTTTATATAAAACGTCTCTGTAGTTGAacagggggggtgggggggggtaggTGGTGAAGGAAGACGTCCCATTTtctagtttaatttgtatttattttttggggtttGCCAGTACAGGAACAGATCACCAACACTAGCACCCACAATGCATCACTGCATGTCTTATTTCAGCCTTGCCTGGCTCTGTCTGCTGAAGACAGGAGGGCTCCCTCATAAGCGAGACCAAAGATTGTACAATTAGGCAAAAGAGGGGCAACACTGGTTGACAGGGATTGTTTGATTACTTACTCGAGGTAGCAAGTAAAAAACAAGCACAGAGGAATGTCGTTGCATAAACTGGCACATTTGAGTTTCTGTGAGGAGTGATCTGAGGGGGTATCCCGAGCCAGACCAATGTTTTGCCCTAGTGTCTTTCAGCTGGAGGCAAGCTCAACATTTTAAAGGATtcacctttttttccccatatatatatatatatatatatatattggttggtatatttattaatcactCTGCTGATTTGGAGATTTTAAGAGTAGGATGCAAAATCGGTACAATGTCAGGAGAACAGGGATCACTGAGAAACCCCACCCTGCAGCTGCTCAAGGGCGAGGGGCTGAGAGGCCAAACAGGAGGTGTATTGTACTTGAATTGCATTGTTGTTGCGTCAGCTAGATCTCGACTGCTGGGTTGATTTGTCATTGGACAGGAAGGACAGGCAGCACTCATAGCAATGGGGGCAGAGGTTGGGAAAGGGGATGCAGACGGGAGGGGGAGGttagtctatttatttatatatataatatatatatatatatatatattcattattttaaagcaatcttGTAGAGCATGTACTATACCCCAAAGCCCATGCTTGCTCTGAAGcataacatttttgcatttgtgcGAGTGTGGGTGCAGGTGGGCACCAACAGTCAGCCCCCCATAACAACATACACACCATCTGAGTGGAGATGTACACACATAGCAGGAAGTGCTGACAAAGCCTGGTCATCAGGGGCACTCaaaagaagaggagaaaaaaacttGAATTGGAAAAGATGacagaaggaggaggaggaaggcagAGGAGGAAGGGTCTGAAGCATAGGAGTTTGGAAGAGGGATGTCTGAACTGCTGGTACCCAGTAGCTGTCACAACGATAGTGTGGCAACATATATTATAAAGCTGTGAGCAAACGGGTTTAAGTAGGCCAAGATCTTTCAAGGTGTAGCAGAATGCATGCCTCTCCCTGCCGCCAGGGTGCGCCACTTCCCCACgttcatacacacacagtgacataGAGCGACAGGACAGGCATTCTGCCAACCTtgatggtatatatatatatatatacattatttacatatacatacagacaaaacaaagagcTGAGTGCAGTTTGTTGGATCACCTGTTGTTGAGTCGGCATTGGCTTTACCGTGTAGTTCCGGTCAATGCTCTCCTCCTGGAGGAACATGTGCAGACAGCGCTCGTTCTGTGCCAGGGGGTGTCCTGCGATCCTgagcacacacagagagaggggcggggggggggtggcgACACACTGGTTagagcacacgcacacacagatagagagagggggggcactcactctcacactcaatTGGCATTCATGCAGCACCCACAGAGTGTTGGGCATGTCCACAGGACACACAGCCAGGAAAGGGAAATGAACAGTCCTGAACCAACTGGGCAAAACAGCACTATCAACCCAGAGCCCCAAATAGCAGGGTTTGTGTAGTTTTCGACAAATGCAAAAGCTGATTAAAGTCTTTACAAGTATTGCCACACTGTCTGTCTATACACACCTCAACTGTGGAGGACGAGAGGAAGTCTCACCCAGTATTTACATAATTTGAGTTAGGGGGGGGGCACTATAGCCACACTGCAGTGCCAGCACAGGAAatgcaaaaacagcacagacCAGAGGAAGTCGTGCGTGTACTTGAATGTGGTTTTAGTTTGTGAAATACTCATCACAGCAAACCACTGCATTAAAGTTCATCAGTTAGAGCAGGGGACCGGACTTCAaattcaatcaataaatcatgcaTCGCATTGAGGCTTCAAACgtatgaagaaaagaaaaaaaaaaaactaaactttttcCTCACCTGGAAAAGCTCTTCCTGGCAGAGAGCAGCATGCTTGAGTGACTATACACCTCTCCCTGCTTACATACTGGCGTGCAAGTGTGCAAGAATGTTATTGTGTACGAGTCTCTGTGCGAGTGTCTAATTATGTGCCTGTGTGGGCAGCTGGCAAGCCAGGCCGGGCCGAGTGTACCTGTTGATGAACTGCTCGAGGCCCAGCCTCCGCTCCTCGATGAAGGACTCCTCGAAGATGCCCTCGTCTCCTCGGAAGGGCAGCTGTCTCTTCAGGGCTTTCCCAGGCAGAGGGGGCACCAACCTTactgtctctctccagctcaTTCTTTAACCACTCAAAGTCGCTGTACCGTCTCCGGACACAAGACTCCTTCAGCTTGAAGATGGGGAGGTTTGTCTGTGGAAGAGACCAGC
>TU106818
ttgtCGGGTTTTCACAGTGGTTTAATATGAACACGATTATCTGACATTACATTTCTTGACAGCAGATCTGAGACAAcaatgccattttctttttcttttttaataaagccCAGACTTAAATTCACAGCAGTTACATATGTGAAAAGGTGgctaaataataaaaggatacgaatatatatttatataaggaTCATGTAGTAACAGCATGTTTATATAAAACGTCTCTGTAGTTGAacagggggggtgggggggggtaggTGGTGAAGGAAGACGTCCCATTTtctagtttaatttgtatttattttttggggtttGCCAGTACAGGAACAGATCACCAACACTAGCACCCACAATGCATCACTGCATGTCTTATTTCAGCCTTGCCTGGCTCTGTCTGCTGAAGACAGGAGGGCTCCCTCATAAGCGAGACCAAAGATTGTACAATTAGGCAAAAGAGGGGCAACACTGGTTGACAGGGATTGTTTGATTACTTACTCGAGGTAGCAAGTAAAAAACAAGCACAGAGGAATGTCGTTGCATAAACTGGCACATTTGAGTTTCTGTGAGGAGTGATCTGAGGGGGTATCCCGAGCCAGACCAATGTTTTGCCCTAGTGTCTTTCAGCTGGAGGCAAGCTCAACATTTTAAAGGATtcacctttttttccccatatatatatatatatatatatatattggttggtatatttattaatcactCTGCTGATTTGGAGATTTTAAGAGTAGGATGCAAAATCGGTACAATGTCAGGAGAACAGGGATCACTGAGAAACCCCACCCTGCAGCTGCTCAAGGGCGAGGGGCTGAGAGGCCAAACAGGAGGTGTATTGTACTTGAATTGCATTGTTGTTGCGTCAGCTAGATCTCGACTGCTGGGTTGATTTGTCATTGGACAGGAAGGACAGGCAGCACTCATAGCAATGGGGGCAGAGGTTGGGAAAGGGGATGCAGACGGGAGGGGGAGGttagtctatttatttatatatataatatatatatatatatatatattcattattttaaagcaatcttGTAGAGCATGTACTATACCCCAAAGCCCATGCTTGCTCTGAAGcataacatttttgcatttgtgcGAGTGTGGGTGCAGGTGGGCACCAACAGTCAGCCCCCCATAACAACATACACACCATCTGAGTGGAGATGTACACACATAGCAGGAAGTGCTGACAAAGCCTGGTCATCAGGGGCACTCaaaagaagaggagaaaaaaacttGAATTGGAAAAGATGacagaaggaggaggaggaaggcagAGGAGGAAGGGTCTGAAGCATAGGAGTTTGGAAGAGGGATGTCTGAACTGCTGGTACCCAGTAGCTGTCACAACGATAGTGTGGCAACATATATTATAAAGCTGTGAGCAAACGGGTTTAAGTAGGCCAAGATCTTTCAAGGTGTAGCAGAATGCATGCCTCTCCCTGCCGCCAGGGTGCGCCACTTCCCCACgttcatacacacacagtgacataGAGCGACAGGACAGGCATTCTGCCAACCTtgatggtatatatatatatatatacattatttacatatacatacagacaaaacaaagagcTGAGTGCAGTTTGTTGGATCACCTGTTGTTGAGTCGGCATTGGCTTTACCGTGATGAGAGAATAAAAGGAACAGCTAGGCCCTGGCTCGAATGCACAGCTTCTCTGGATCACTGGTGCTAgattcaaaatgaaattgaataagattaaattttctttttttgttcttgtgtgcgtgtttgttgGGAGAGTTGagacaacattaaaacaaattgtcaaAGATTATCAATACAAGTATGAGGCACCCTTGTGAAGGTCTAATGTCTCTAGCCTCCTTTTTACGGGAAAGCAAGGGCACAGTTATCCCCCCCTCCACCCGTGTATGTTAAGCAAGACTCCAAAAGATTTGTTTCTCCGAACAGGAATTCAAAATTAGCAGCAACCCAGCTTGCAGACCTGACACCTAAACCATGCCTCAGTAGCAACCATCACGAGAATACTCTGCCATGTTAAACACTGGCAAATGAGCCCCCAAAAaaggcgtgtgtgtgtatatatattacacacacacacacacacacacacacacacacacacacacacagtaaagagacgtgcacacacacatgcacactgacAAGAGATGTGCCCACACACGTACACCGCCACACAGAGAAGCACACaaattcactcacacacagaaaacacacagaaatctCCACCAGATAGGAGACAATTGAGAACAGGTGACAGGTGACTGGATTTCTCATGCCCCTTACACTGCTGCACCAGGAGCTCAGGATGGACACTGGCAGTTTAATACACTGTCCAATAAAAGCCCTTTTTTCAGGCATGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106817 True 2757 lncRNA 0.46 4 16015533 16020742
TU106818 False 2398 lncRNA 0.43 3 15976565 16020742

Neighbor

gene id symbol gene type direction distance location
AMCG00021364 NA coding downstream 106035 15862894 ~ 15870530 (-)
AMCG00021355 LOC107751967,LOC107560772,LOC107661382,LOC107658087,LOC107601119 coding downstream 441431 15528669 ~ 15535134 (-)
AMCG00021357 hprt1,LOC105912559,LOC107601120 coding downstream 450382 15515619 ~ 15526183 (-)
AMCG00021356 NA coding downstream 487168 15480851 ~ 15489397 (-)
AMCG00021352 ddx26b,ints6l,LOC107601122,LOC107560701 coding downstream 514515 15434040 ~ 15462050 (-)
AMCG00021382 rab39b,LOC103034714,LOC108428007,LOC108278912,LOC106602960,LOC106609056 coding upstream 99446 16120188 ~ 16121592 (-)
AMCG00021388 rbmx2 coding upstream 188996 16209738 ~ 16212465 (-)
AMCG00021392 NA coding upstream 195694 16216436 ~ 16217455 (-)
AMCG00021393 LOC106603592,LOC106567886,LOC105023927,LOC107587290,LOC103395138,LOC100711063,LOC102300059 coding upstream 336523 16357265 ~ 16359007 (-)
AMCG00021396 NA coding upstream 418694 16439436 ~ 16452644 (-)
G85568 NA non-coding downstream 42388 15921022 ~ 15934177 (-)
G85569 NA non-coding downstream 46786 15924958 ~ 15929779 (-)
G85543 NA non-coding downstream 73198 15863731 ~ 15903367 (-)
G85535 NA non-coding downstream 114618 15804736 ~ 15861947 (-)
G85530 NA non-coding downstream 221119 15750551 ~ 15755446 (-)
G85658 pof1b non-coding upstream 158420 16179162 ~ 16266798 (-)
G85716 NA non-coding upstream 450810 16471552 ~ 16471759 (-)
G85771 NA non-coding upstream 544975 16565717 ~ 16566021 (-)
G85802 NA non-coding upstream 670825 16691567 ~ 16757611 (-)
G85824 NA non-coding upstream 787064 16807806 ~ 16809320 (-)
AMCG00021304 NA other downstream 1905240 14057918 ~ 14071325 (-)
G85115 NA other downstream 1924668 14049974 ~ 14051897 (-)
AMCG00021302 NA other downstream 2025521 13948307 ~ 13951044 (-)
G85037 LOC100846954 other downstream 2058697 13869939 ~ 13917868 (-)
G84952 NA other downstream 2348818 13627335 ~ 13627747 (-)
AMCG00021387 NA other upstream 213575 16234317 ~ 16242655 (-)
AMCG00021412 NA other upstream 626397 16647139 ~ 16649940 (-)
AMCG00021435 hdx,LOC107572093 other upstream 1265507 17286249 ~ 17303470 (-)
G85953 NA other upstream 1398862 17419604 ~ 17423418 (-)
G86010 NA other upstream 1526420 17547162 ~ 17552766 (-)

Expression


Co-expression Network