G85623


Basic Information

Item Value
gene id G85623
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16140523 ~ 16169886 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU106874
cacacacacacacacacacacacacacacacacacacacacacacgcacacacacacacacacacacacacacacgttttctACCATGCTTCACCTGAGGTTCTTATTTCCTGTCCCTGGGATCGTTTGGGGTTTTGTGGTGTCTTGTTACATGGATGCTTGTTACTGTGATGTATTTGAACACTTGTTTatgactgttttattattttgttgttccttcccctcccccccgcCTCACAGGCCTTTGTTTTAGGGCCTATTGCTTAGCAGCGACTGCATTCTGGAACACCCCAGTGTGTTCTagacccacccccccacccctgcccgCCCAGTTAGTTAGCTCTCCGATTGTGTTCAAGATTCCAGCTCTCCCAGTAGGTCTTggtcagatttaaaaatatatatttatttaccctCTAAGTTTCTGGTGCCCGTCCCCGGGTCAAGGGTGCTGTGAAAGCGCGGCCGGCCGAGctgtaagaaaaacagaacGCAGAGCTGTGGAACAGACGTGTGTCGTAAGGGAAGAGAAATGCTAAAAGGTCTGTTTCAGTGAAGAGCAGCGTCTCTGCTCAGCGCAGGCCCAGCGGAGCAGGGGCTTGTGGGCAGTCTACCAGGGCTAGGCCTTCGTGCTTATAGCTGCTTACCTTTTGTGGATGTTCAGAGAAAGCATTGTGGTTAGATGAGTTTTCTCTATTTTACCTCCTGATGCTTGAGACCTGTCCTGCATGTAGGGCATAGGTAAATAAGCTGCAGATTTGGAACCGACCTGCAGAGACCAGGTGAGGCCTAGCTCTTCGGTCATTAAAAACTGATAGTCCACCGTAACTGATACGCCTTTTTTATCCCTCCCCCATGTCTTTTGGAACCTTGTGATGGTCCTTGTGGCCCTAAAGGCAGTCCAGCACCTGGGAATTGCACTCAAATGGGCAAACAAATCCTGATACAGTACCTGTACTGGTTCAGTCTGACTCACCTGAAAAGCCACTTTCACGTCATTGACGTTTTCCTCTGGCTTGTGTCTGTGCTAGTGGAGTCTTAGCAGTTGAcagcctgactgactgactgtcttgTGCCGAGtagtagttgtttttttgtattggcaTTTGTCACGTAGATCCATCAAAGGCTTCTGTGTCCCAGGACTACAGAGGCCCGGTGTCTTCTGGTTGGCTCACAGCCCTGTCTGTATACCCAGCAGGATCTCCTCTGTACATCACGAAAGCATAAATCCAACTACTTACTTAATTTGGCCTTCAGTATAATGCCACagtggtagttttttttttttttttttttccctgttatGCTTCATTTTTGTCTTTCCCTCCTACCTTTTGAGACACAGTGGTGGTAGCAGTTTGGAGTCCTTGCCGAGTCACCCTTCTGATGCATGCCTTTCAGAACAGGAGGTCAGTCATTCCAGCCCCAGTTTTTGGATTTCGGTTTGAAAAAAACTATCGCTACCACATtgattttgtgcgtttgccAGCGTGAGCTCCAGGGTGCTgtagagtgagagtgtgtgcaagagtgaatgtgtgtgagagagagcgagagagtcaAAGCAGGTGTAGTAACTGCATTAATGAATCAGAGCCTGATTTCTAATTGGCACAGTCAGCTCCTTTACTCTCCGAGGCACAGTGCTGGAAGTTTCACGGCATCGTTAAAGTCAGTGAGAAATGTACAGCAATTAGCACAACAATAAAGAagtgaaataattatatatataaaaatagcttccaaatgcacaaaacaaatgctgtttGCTGGAATGTAgatggatggggggggggggctttatACTATGGAGGAAGTTTATATGAACATATAGGGGACATCTGTtaagtaaatgtattgtttctgttacTGTGGTGAGAAAAGGAAAgggtaaaataaagaaaatttgTATTACAATGAAAACCGGGGTGCCTACCCCTGCAAGATGTTTAGTTTCTGTACCGAACAGCTCTGGGCTCCATGCAGTTTGGGCCGCTCGCGGTGAGCAGCACAGTGTGATGGACTCCCTCGTATCCTGCCTGCCTGCTGCCAGGCGTGATGGTTCCAGAACGCCCCGTGCCCCAATCAGAGCAGGCCCCCTCCATTGttcttcgttttttttttttttttacttatttattactaTAACAACATCAGCACTTCAAAGTGTCtctatctatgtatgtatgtatgcatgtatgtgtgtatgtatgtatatgatcATGTGAACATACATTAACCCTGGTTATCATGCTCcttatgtgtgtgtacacttcCATTTCACTAGTATCGAGAATGAACTTTTTTTCACGGGGGTGTGGGGGAATGTAGTGTAACTTTGAGGACAGGCCGGCCCTGCTTATTCTGAGCCTTAGttgatgctttttctttttcccctgaGAAGGTGCAGAGCCCCCCTAACACACCCCCCAAGCCAAGTTATAAAAAAACCTAGAACTGTGCCGATTTCTCTACTGTATGCGACCTGTCTGGCTGTTTCCGTGTGAGCCATTCAGCCAGCAGAACCTGAGGAATAGCAGAGTGGCCCAAAATGACATCATTGTTTCTGTAAACTGACCTTGAATAGGAGTGCAGTGCTGCCCTGCACACACAACCCCTGGGCACTTTGATGTCCCTGGTTCCGTTCCCCAGGCAGGCTGAAACCAGCACCTGGAAGAGGAAAGACCAGACTGCACAACTGCGGTCCCCAGAGAGGCTGTGGCCTTTATCATTGTTTCCTGTGTCACTGTGAGCAGATCTACCCCCCACCAGCCCGGTGTGCTGACACAGTACCTGCAGAGTCTCCCCCCTcggtggtttgtttttttgctttctctttctttttgtttgttagtttttctgcttgtgtttttcctcttctctgTTGTCAGTGTTTGTGAAAATTTCAGGACATCTCTCAACATTTCCTCAGCCGCTGCCTCatcttttgtatgtgtgtgcctgtgtgtgtatatgtttgtgtgtgtataatatataaacacactgcaatgtacactttttttttttttttttctaaacttaAGATATTTGcattctataaatatatataaacactttatcatttgtatttaaaatcagaGGAAGGAATGCTGCATTTTTTCTGGTTCATTTTTAATGCCAAATTATTCCTCTGATAGGGAGAAccaccttttttttattattattattattattgtacatgtatttataacagCAGAATATCAGGATTTAAGGTCATATAGTGAAACAATACAGATCatgggcttttattttttaattcatacagAATTGCGATAAACTGGGTTACACAAAGCtgtttgggggggggagagaaataaaggtcaaaggtcatccTTAGGCAGTGTATGGACATTTATTTGGCCACAGCATCACATTgttttcctgtctctgtttttgttgtttttatgaacCGTGGATTCATAACTTACACTGGAGCAGAAGGGAAAATGTGTGCTGGCCCTGTAAGGTGCGCAGTGTGGGATTTGGTGCTGCAATTTTGGTGCCGGCTTCCCTCAGCCGTACCTCTGGAGGGTCAGGTCGGGGAGGAGATCCTGGTTTCCAAATCGTGCTTcacactgctgcctcacagtgCGAGCTCTGGGCTGGTGAGGGGCGCTGTGCGTAAgctgcatgttttgttttgttttttgtactaaataagaaataaatacatacatataagtac

Function

GO:

id name namespace
GO:0008410 CoA-transferase activity molecular_function
GO:0008260 3-oxoacid CoA-transferase activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction

RNA

RNA id representative length rna type GC content exon number start site end site
TU106874 True 3709 lncRNA 0.45 2 16140523 16169886

Neighbor

gene id symbol gene type direction distance location
AMCG00021377 rab38c,LOC103035037,LOC108427929,LOC107733499,LOC107673818,LOC108278910,LOC107579578 coding upstream 9265 16125521 ~ 16131258 (+)
AMCG00021379 vbp1,LOC107588140,LOC107668907,LOC102781525,LOC107562614 coding upstream 27103 16111308 ~ 16113420 (+)
AMCG00021381 NA coding upstream 29664 16110416 ~ 16110859 (+)
AMCG00021383 NA coding upstream 32841 16106498 ~ 16107682 (+)
AMCG00021384 NA coding upstream 37314 16102973 ~ 16103209 (+)
AMCG00021380 NA coding downstream 6476 16176362 ~ 16181822 (+)
AMCG00021390 siah2l,siah2,LOC102786130,LOC101471392 coding downstream 13937 16183823 ~ 16184805 (+)
AMCG00021391 siah2,LOC108431284,LOC107732330,LOC107692789,LOC107697363,LOC105023934,LOC107587204 coding downstream 30059 16199945 ~ 16202371 (+)
AMCG00021385 slc25a14,LOC106567890,LOC107697362 coding downstream 53018 16222904 ~ 16232810 (+)
AMCG00021386 NA coding downstream 86579 16256465 ~ 16270872 (+)
G85552 NA non-coding upstream 217802 15920739 ~ 15922721 (+)
G85507 NA non-coding upstream 385091 15753082 ~ 15755432 (+)
G85497 NA non-coding upstream 564005 15575549 ~ 15576518 (+)
G85426 ddx26b,ints6l,LOC107658008 non-coding upstream 573697 15446311 ~ 15566826 (+)
G85674 NA non-coding downstream 119863 16289749 ~ 16292193 (+)
G85746 NA non-coding downstream 377771 16547657 ~ 16549345 (+)
G85757 NA non-coding downstream 399561 16569447 ~ 16569650 (+)
G85758 NA non-coding downstream 402307 16572193 ~ 16572868 (+)
G85760 NA non-coding downstream 414431 16584317 ~ 16584765 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 66902 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 708159 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 2067398 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 2106966 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 2703115 13435307 ~ 13437408 (+)
G85764 LOC103366846,LOC106930986 other downstream 420295 16590181 ~ 16592973 (+)
G85787 NA other downstream 486758 16656644 ~ 16714038 (+)
G85869 NA other downstream 827991 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 1300439 17470325 ~ 17473396 (+)
G86121 NA other downstream 2078604 18248490 ~ 18249686 (+)

Expression


Co-expression Network