G85658 (pof1b)


Basic Information

Item Value
gene id G85658
gene name pof1b
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16179162 ~ 16266798 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU106916
TTGACATGCCCTACCATACCTCCTGCATATTACACTGCATACCCCACTGCATCTGTGCAGCACACTCATGCTGTGCTTCTCATCTGCATTCACAGGAAACACCACCTAGATCCCACCATCAATTACAAGGTGGAGAAGGATGAGGTGGAGGCACTGATCCCGAAGGGTGCATCTGAATTGACCAAACAGCAGATTCGCTACCTGCTGGAGACCCGGCTGACTGCCGATAAGACTCTGCGTCTGCTGCTCACCACCTTCAGCAGCCTGAGAGAGgagcttcttcacctgcaggaTGACCTCCGGGGGCTGGAGACTCACCCCCCAGAGGTGAAAATCCTTGTGAAAGAGTTTATCGCTCTCGAACTGGATGTGAACTGTCATCTGGAAGGCAggagacaaaaatgaaaataatattaagaatttaaaaaagtaataaaaagacTTCAGAGCCACCTGATAAAACCTACAACATGACACAtaaatgcatctgtgtgtgtgtgtgcatgcgtgcctGTGTGTtcgtgcgtctgtgtgtgtgtgtgtgtgtgcacatttaCCCACCACGGTGCGGTTTGTCTCCACGTAAGACTGGTCAGGGACGGCGTTCTTGGCATACACAGTGACCACCACCTGCCTGCTGGTCTGGTGCCAGTCATACCGGCATGCCACCTTCTTCTTGTCCTGCAGCAGAAAACCAGAATCTCTGTACAGAACAGCGGGCACACAGCAGCCATGCGGACAGCCACCGTGCCATTTCGAGATTTTGTCATTAGTTTCATTACACAAACTGCACTACTGTCTAAGCAAAGAAGGACATACCATCCATACTCTAATCCCTCCACCTCCGTTTTTATATTCAAATGGTGTGAGATTGTGCGTCGGGGGTAGTTGGGGGCAGCAGCAGTACCTGTTTGGGGACCCAGGTGTGCTTCCCTGTACTGCAGCCCTTCTGATCCAGGAAAGCATTGAAGTCTGTGGTTCTGATGCAGCAGCAGTTCCAGTATTTAAAGCTACAAACAGCAGAaaccagaaagagagagtggaAAGGgggcacattttaattatatatgttaaAACAACAAGGTGAACTGTGTACAGTTATGGATGTGTTTATACTCCTATTAATGACACCAGTAATACGAACAGTGAGCTCTCACCCCTCATGGAAAACGGGCACCCCGGGATGGTGCAGGCAGGTCTCGCCATCCGTCTCCGGGCCACTGTAGACCTGAGGAGAGAGAGTCCGAGGGTATGGTCGACACACTTCCTACTCAGAACCCAGACTGGTGTGCTTGAGTAAAAGGGAGTTTAGAATGAATTAAGTTAAGTTCAGTTTAGTTAAGTCAACTTGCCACTGGTATATCACTGTTGACCTGTAGCGAGAACAGCTTCCCTCAGCTCCTTTCACTTACACACAGCTGACAAAAACTCACACCAACGCTGAGTGTCCCTGGGCAGGCACGTGCACAGGGGTGGGGGTGAAAGCCCCCCTGGGCGACAATTCTTCACCAGCAACCCTAACCTCCCTGGGCGACAGTCCAAAAGTGTCCTCAGCCCCAATCAAGAAACTGCCCCTCTAATGTCCACTGCATGATACGGTCCCTGAGGTCTCTATGGGAATGGGGGGGAGCTGTCCATTTCCCTCCATTGTCATTTCCTTGATCTCTGCAATTACCCAACTGGCCACATGGTGGAGACAGAGATCAAGTTTAGCCTCtctcttatttaattttcttttggtGATTCTGAAAAGCCTCCCACTGGGACAGAAGTGAAACTCTCTGCATTAAGCACACACAAGGATCACCCACACCCACGCACACCCACCGTCTTGCAGCCAGCGTTCTTGCACCTCGTGCCGGGCATCACAGCTTGGCTCTCTGCAGGtcagaaagaggaagagagagggagggaaatcAAGAGCAGGCTGAAACAGGATGGGGTTGCAAAACATTCTTGTGAAAAGTGACTAAGCAATATAAGGAGGAAAGAGGTTGCTGAAAAGGCAGGGCTGCCCCTCCTAACGCAGCTGCACACTACGGTACAGAAACACCCCTAGTCAGAGGCGGAAGACACCGGGAGagcaaacagataaataaactaCTTAATTAAGGTGCATATGAAGTACCCTCTCTGTGGCTGCGGTGCCCGAGAGCACCCCCTGGTGGTGGGGCACATTACCTTGCTCCTTTTTCTTCTGCATCTCCGAGAGACTGAGCTTCTCCAGGGCCTGCGCGAGAGACTGCGACACCCTGACCGGCAGTTTGGTCTTGGGCTCGTCCGAACTGCagcaagagagaaacaaaacgcATCAGCGCAGGGTCTG
>TU106917
TTGACATGCCCTACCATACCTCCTGCATATTACACTGCATACCCCACTGCATCTGTGCAGCACACTCATGCTGTGCTTCTCATCTGCATTCACAGGAAACACCACCTAGATCCCACCATCAATTACAAGGTGGAGAAGGATGAGGTGGAGGCACTGATCCCGAAGGGTGCATCTGAATTGACCAAACAGCAGATTCGCTACCTGCTGGAGACCCGGCTGACTGCCGATAAGACTCTGCGTCTGCTGCTCACCACCTTCAGCAGCCTGAGAGAGgagcttcttcacctgcaggaTGACCTCCGGGTATgcc

Function

symbol description
pof1b Human ortholog(s) of this gene implicated in primary ovarian insufficiency 2B. Orthologous to human POF1B (POF1B actin binding protein).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: protein POF1B, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106916 True 2326 lncRNA 0.51 4 16179162 16266798
TU106917 False 310 lncRNA 0.54 3 16266009 16266798

Neighbor

gene id symbol gene type direction distance location
AMCG00021382 rab39b,LOC103034714,LOC108428007,LOC108278912,LOC106602960,LOC106609056 coding downstream 57570 16120188 ~ 16121592 (-)
AMCG00021376 NA coding downstream 171083 16002219 ~ 16008079 (-)
AMCG00021364 NA coding downstream 308632 15862894 ~ 15870530 (-)
AMCG00021355 LOC107751967,LOC107560772,LOC107661382,LOC107658087,LOC107601119 coding downstream 644028 15528669 ~ 15535134 (-)
AMCG00021357 hprt1,LOC105912559,LOC107601120 coding downstream 652979 15515619 ~ 15526183 (-)
AMCG00021393 LOC106603592,LOC106567886,LOC105023927,LOC107587290,LOC103395138,LOC100711063,LOC102300059 coding upstream 90467 16357265 ~ 16359007 (-)
AMCG00021396 NA coding upstream 172638 16439436 ~ 16452644 (-)
AMCG00021406 NA coding upstream 236943 16503741 ~ 16504379 (-)
AMCG00021404 NA coding upstream 278955 16545753 ~ 16550094 (-)
AMCG00021411 vamp7 coding upstream 300341 16567139 ~ 16572494 (-)
G85580 NA non-coding downstream 158420 15976565 ~ 16020742 (-)
G85592 NA non-coding downstream 167460 16011231 ~ 16011702 (-)
G85590 NA non-coding downstream 177941 15993252 ~ 16001221 (-)
G85568 NA non-coding downstream 244985 15921022 ~ 15934177 (-)
G85569 NA non-coding downstream 249383 15924958 ~ 15929779 (-)
G85716 NA non-coding upstream 204754 16471552 ~ 16471759 (-)
G85771 NA non-coding upstream 298919 16565717 ~ 16566021 (-)
G85802 NA non-coding upstream 424769 16691567 ~ 16757611 (-)
G85824 NA non-coding upstream 541008 16807806 ~ 16809320 (-)
G85837 NA non-coding upstream 556018 16822816 ~ 16823079 (-)
AMCG00021304 NA other downstream 2107837 14057918 ~ 14071325 (-)
G85115 NA other downstream 2127265 14049974 ~ 14051897 (-)
AMCG00021302 NA other downstream 2228118 13948307 ~ 13951044 (-)
G85037 LOC100846954 other downstream 2261294 13869939 ~ 13917868 (-)
G84952 NA other downstream 2551415 13627335 ~ 13627747 (-)
AMCG00021412 NA other upstream 380341 16647139 ~ 16649940 (-)
AMCG00021435 hdx,LOC107572093 other upstream 1019451 17286249 ~ 17303470 (-)
G85953 NA other upstream 1152806 17419604 ~ 17423418 (-)
G86010 NA other upstream 1280364 17547162 ~ 17552766 (-)
AMCG00021444 NA other upstream 1314444 17581242 ~ 17585441 (-)

Expression


Co-expression Network