G85674


Basic Information

Item Value
gene id G85674
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16289749 ~ 16292193 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU106936
CACCTCAAACAATCTACAACTGTGGGTATTGCAGCCCTCCAAACCACAGCACCTGTGTCTTTATTTAACTTGTTccggatatttatttatttattttactttttattttctttctatctatccttcctttcattttttatttttccttaccCGTCAAGACAGTCGGAATCTTTCAGTTTGCACCGTATAGGAGagttaagaaaaagaaaaaaacatccacacCAACACATCGGATAAAGGCTACAGGTGGCTCTGAGGGTATGTTCAGGTCCTCTTGGCCTGAGCCCCAGGATCTGCAGGTGGACGTGGTGTGAAAGCTGTGGCAACTAGCGAGTTGGGCCAATGTTCCCCTGGAGCCGGGGGGATGGAGAGCAGCGATGTGGTGAAAAACAGGAGGTGTGGACCTCACTGTGTCTCTACAGCACTTCAGTCTCCAGGCTGAGAAACAATGCAGGTGGGAATTTTTCAAGCCACGTTCGATGACCAAACTTCAATGAGACTCTTGGAGATGGAgccgtgagagagagagagagagagagagggggaattatatatgtataattgtcCTGTTTTAACTGACAACACTGTGAAGAAGCCCCACTGGTCTGTGCTCCCACCTGGGGCCTGTGCTCCTTGGTGCTCTTGGTGCATCAAGATGATCTTTTGGAGATGTACACGGGGGAACAGAAAGCACAAAGCTGTGCACGGTGCCCAGATGCCCCCTAGGGTACTGGaagctgtgtgtgagagtttagCATCAACTCTGTGGAGAGAAGAACGCTGGGCAGATGCTGGTCTCCTCGGGGTGCGACTATGGACACTCCATTGACTGACTCATACAGTGCCTACAGGCTGAAACTGAGAATCTGCCCCTAGGGGAGCCTGGGCAATACCTACACTGTCTGTCTTGGCTGTTTGGCTACAGAGaggagcacagagcacacagagagGCCAGCCAGGCCCAGAGAGGAGCATGCTGtcaaaaaaacactgcagttgtGTCTGGGTTTGTTTGAGAATGATGCGCAGtgtgcactgtatatatacatatatatatatatctgcagaATAATCATATTTGTTAGAATtactttgatatatttttgtatgtaattattattattattattattttttcttcctctttttctcctcctcctccttcaacttttttcttttcattattgatATTAACCTTGAGTCTGTCAGAAGCCTGATCATTCTGCTGCTTTACACTACTGTTGCATTGTGGGGGAGAAGTCTGTTGGAAAGGGTTGCTGTACTGGGATTGTCTTAGTAAGTAACTACAGGTGCAATGGGCCTGGCTCTTTTGGCCAGTAGGTAGAGCTCTGAGATCTACACAGCTTCCATTCCACTATCCAGGGGCTCAGGGGACGGCCTGTGCCCCCCGGGAACCACACTGGTGCAGGCTGGCGCAGTCCTGGACCCGGAAGAGGCACACTTTAATCCAGGCATTCCTTCCGCTGGAGCATCTCAAATCCTGATATACCAATTGGCTGCAGAGGACCAATGTAGAACCTTACCCATTGCTTAAGGTGCTGATGAGTTACAAAATACTATTAAACACATATTCACCcgatacacatatatgtattgaCATCACTATAGAGTTAAAACAAGCTCATGCTTACTGTAATATCCTGTAAAATCACAGTTCAGACCTGGACATTGAAATGGTCTGGTGATTGCCATGTGGAGattaatactatatatacatatatgtgtgtgtgtaagtgtgagtgtgtgtatgtgtaggtgtatatgtgtgtgtgtgagggtgtgtgtagCTTCTGCATGACAAGAGCCACAGACAGCTCTCTCTGTTCAGTAACGCCTGCTGTCTGAACCACTTCCTCTCCACAATGCAAcctgggaaaaataaatcctccCTTTTTGCCAGCACTGCTGAGCAGGTCTGTGTGATCCTGTGCtcctgtcagtcagtcagtggtgCTGTGCTGAGAGAGGACAGGTTGCACTGTACTGGTAATGTGCATTGTAAAGGAGTGTCAATCTGGTGCAGCCCGTAGGTTAACTTCTGTCACCTCCCCCATGAGTAATCCTAAGTATTGCTTTGGTACAAATTGGCATCTTGTAtgttgtacaaataaaataaaataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106936 True 2142 lncRNA 0.45 2 16289749 16292193

Neighbor

gene id symbol gene type direction distance location
AMCG00021389 NA coding upstream 141 16288754 ~ 16289608 (+)
AMCG00021386 NA coding upstream 18877 16256465 ~ 16270872 (+)
AMCG00021385 slc25a14,LOC106567890,LOC107697362 coding upstream 56939 16222904 ~ 16232810 (+)
AMCG00021391 siah2,LOC108431284,LOC107732330,LOC107692789,LOC107697363,LOC105023934,LOC107587204 coding upstream 87378 16199945 ~ 16202371 (+)
AMCG00021390 siah2l,siah2,LOC102786130,LOC101471392 coding upstream 104944 16183823 ~ 16184805 (+)
AMCG00021395 LOC103355350,LOC107387146 coding downstream 126030 16418223 ~ 16434076 (+)
AMCG00021394 NA coding downstream 174514 16466707 ~ 16471856 (+)
AMCG00021397 NA coding downstream 182590 16474783 ~ 16499645 (+)
AMCG00021405 NA coding downstream 226377 16518570 ~ 16520363 (+)
AMCG00021398 NA coding downstream 233870 16526063 ~ 16527195 (+)
G85623 NA non-coding upstream 119863 16140523 ~ 16169886 (+)
G85552 NA non-coding upstream 367028 15920739 ~ 15922721 (+)
G85507 NA non-coding upstream 534317 15753082 ~ 15755432 (+)
G85497 NA non-coding upstream 713231 15575549 ~ 15576518 (+)
G85455 NA non-coding upstream 726832 15561745 ~ 15562917 (+)
G85746 NA non-coding downstream 255464 16547657 ~ 16549345 (+)
G85757 NA non-coding downstream 277254 16569447 ~ 16569650 (+)
G85758 NA non-coding downstream 280000 16572193 ~ 16572868 (+)
G85760 NA non-coding downstream 292124 16584317 ~ 16584765 (+)
G85763 LOC105929187 non-coding downstream 294124 16586317 ~ 16589411 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 216128 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 857385 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 2216624 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 2256192 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 2852341 13435307 ~ 13437408 (+)
G85764 LOC103366846,LOC106930986 other downstream 297988 16590181 ~ 16592973 (+)
G85787 NA other downstream 364451 16656644 ~ 16714038 (+)
G85869 NA other downstream 705684 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 1178132 17470325 ~ 17473396 (+)
G86121 NA other downstream 1956297 18248490 ~ 18249686 (+)

Expression


Co-expression Network