G85758


Basic Information

Item Value
gene id G85758
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16572193 ~ 16572868 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU107042
TTGCCGTGTGAGTAGGTGAGCTTGTTGTTCTCTGAAGGGATCTTAGCCAGGATCTGCTCCGTCACCTCCAGGAAGTTCCCGCCGCACCAGGCGTGCTTGGCGAGGATGGTCGTGCCACGCGCCACCACCGCGAACAAGATCGCCATGGCccaggaggaggggggagaagTGGCAGGTGGGTAGGGGTCAAGGGGATGGGATACACAGGTAGCAGCTGGCCAAAACACAGAGACGAAAgggctggaggaggagaaggaggagctcAGCTGTGGAGGAGAAACCACAGAGTGAGACACCCACATGGAAGATTACAATACAGGTATGCTTTTGTCTGTAGGACAACCCAGACAGTGTCTACAAAACACACGTCTCTCCCTGGAAAGCCCACTTCCTACACGTGGAAATGCTCTGGATGCATTCAGCATGTGGTCTTCAATCTGACAGTGTCCACCTGAAAAGAGGCAATCATCACTACTGAGGTGTTAGGAGTGCATGGGACGGTGCAGCAGCGCAGCTGGTGAATCCTGTGACAGAGGCCATGGGTGCAAAGGTCCTATATACACCTAACACTGCTGCAGCGCTGGGCGCCTGTTTTCAGGTGGATAGACTGTCAGATTGAAGACCACACACTGAACGCAACTAAAGCAATGGGTTGGTTTACTTATTTTCGTATTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107042 True 676 lncRNA 0.54 1 16572193 16572868

Neighbor

gene id symbol gene type direction distance location
AMCG00021401 NA coding upstream 10417 16556598 ~ 16561776 (+)
AMCG00021399 nup62,LOC100135786,LOC106603332 coding upstream 16548 16550033 ~ 16555645 (+)
AMCG00021400 cnga2,LOC103395327 coding upstream 26694 16541957 ~ 16545499 (+)
AMCG00021402 NA coding upstream 36377 16531948 ~ 16535816 (+)
AMCG00021398 NA coding upstream 44998 16526063 ~ 16527195 (+)
AMCG00021403 NA coding downstream 1060 16573928 ~ 16579544 (+)
AMCG00021407 LOC105927798,LOC100704732,LOC103366304,LOC102229095,LOC107386560,LOC101162152,LOC101061287 coding downstream 63487 16636355 ~ 16642487 (+)
AMCG00021408 NA coding downstream 80572 16653440 ~ 16655886 (+)
AMCG00021415 NA coding downstream 182065 16754933 ~ 16756372 (+)
AMCG00021416 NA coding downstream 205714 16778582 ~ 16790852 (+)
G85757 NA non-coding upstream 2543 16569447 ~ 16569650 (+)
G85746 NA non-coding upstream 22848 16547657 ~ 16549345 (+)
G85674 NA non-coding upstream 280000 16289749 ~ 16292193 (+)
G85623 NA non-coding upstream 402307 16140523 ~ 16169886 (+)
G85552 NA non-coding upstream 649472 15920739 ~ 15922721 (+)
G85760 NA non-coding downstream 11449 16584317 ~ 16584765 (+)
G85763 LOC105929187 non-coding downstream 13449 16586317 ~ 16589411 (+)
G85766 NA non-coding downstream 23333 16596201 ~ 16596902 (+)
G85784 NA non-coding downstream 74271 16647139 ~ 16649848 (+)
G85823 NA non-coding downstream 234938 16807806 ~ 16809314 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 498572 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 1139829 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 2499068 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 2538636 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 3134785 13435307 ~ 13437408 (+)
G85764 LOC103366846,LOC106930986 other downstream 17313 16590181 ~ 16592973 (+)
G85787 NA other downstream 83776 16656644 ~ 16714038 (+)
G85869 NA other downstream 425009 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 897457 17470325 ~ 17473396 (+)
G86121 NA other downstream 1675622 18248490 ~ 18249686 (+)

Expression


Co-expression Network