G85869


Basic Information

Item Value
gene id G85869
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16997877 ~ 17004131 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU107177
GTGAAAATGGAAACCAACTACAAAGTACATAATACACTCGTTTAGAATCAGAAATCTCtatcaaaatgaaaactttacaaaaatgtacaggattttcttttttttaaccttttatttttacagtaaaaaaaacaaacaaaacaaaaaaaaaatcgtaaACTAAAAGCCACAGCTATCTCATtgcatataaatattacatttggtCTGCCTTGTCGGCATTAACAAAAGTCCCTGAACTTTTCTAATAGAGGGTCCTGAGAGGTGGGTAGGGAGAAAGATTTGGCGAACTGGATTTGTCCCCAACACGCAGCTTCAGATCAGGCCAATAGTTACCAATACACCTGGACAGCTGCAGGTAAAATTACCTGCCACATGGAAATGAACAATAAAAGACTGAGCAGCAAAACCTGGGAGGACACACCTGTTCTGGAAAACAAAGATTTATTGCTCACTTAACTGTGgcctggaaaaaatgaaaacaaaagaaaaaaaaactgcaaacaaagaataaaaaaataaagtaaaaactgaaaaacaaacacaggtaACAGGTTTGCAACACTTCTGTTTGTCGGTGAtgtaaaactgacattttcacatttcacaaccAGGTTCAaagtttccatttatttattttaggatttACTCAGATTGCACCACCGCTACTGAAAGTCACAGGTGAAACCACCTGTAGTTTGGAGTTGcctcctttaaaaataaaatcctacaGATTGCACTCAAGACTGAGAGACAGAAGCTCACTAGCACTCCCCTCTGGATTAATTCAGAACtgaaatttatatattttaattatttgtcagGTTTCCAAATCAACCTGAACTTTCCAGGAACCTCAGGCAAGAGCCACAGATTCCATCTCAGTGTGGGAAAGCACAACATTGTGCACATAGGAGGATGGGCTAACTCATTGCATGCTTTGGCCTAACAGGCATGGGAGGGAAGACTCGTGGGCCTCAGGATCCAGGTCGTTGGAACAGCAGGATTCCAGATTAGGAGGAGGAGGTCATCAAGAACAAGGCCAAGTAGGCCTTTCTGGACTCTTGGCTGGGATGCAAGGCTGAGCTTGTCTGAGATGGGAAGGGTACAGTCACAGCCACTGAAGGCAGACCAGCACAAACTTACACTGAAGCACCCTTCCTCTGTAAAATAGCACCTGTAAGGAGACTGGAAAGGCTTCTGAGAAAAGTCTCCCCACTTGATACCCAAGAGACCAGAGTGCAGTAACTGCTCGCATCCCACACTactacaaaagaaaaggaagaccAACATAACCAAAGAAAATGGTCCTTCCATATtcttacaacaacaaaaatgtgaaggATGAGAATTTAGGTTTTGCCATTAAAATGTAGAGCttctacataaaataaaaatatgaaatagaaaTGTACTTATATATATCAACACCTCAAGAATAACTCCATAATCCACAGAGGCAGCACTAAACCAAGCCTCCAGCACTCCCTGGAGATTCACCATGTGGCAAAAATTATATCTCCCACTGAACAGCTGGAGTACACAGAGCAGCCATCTAAGCTCGACCCAAACGGTCTCTGCGCAGGACTAGTGGTGCTGCAGACTGGCCACAGTGACAGGAGCTCGAAGTGGTGCTCTGTGGTCATGAGCGATGCCAAACCTGCCCTAGCTCCTTCTCTCTATTTATCTACCCCCCACCACCTCTCCCTACAGAATTCTGGGGTTCAGTTGCCAAAATGTAACAGTTAAAAAAGTCCTTCCTCCTAGTCACCCTGGGCTGGCAGGCCAGGAACAGGAATGTGATGGACAACACGCAGCACAAATCTTTAACCGGTGTGCAGACAAATCTTTCCCATCGATCCTCACTGTGCACATCAGCCCTTATAGTTACTTTTATTGAACAGCAAGGTCAACAAAGAGGCTAATATTGGATGAGCAAAGGATCGGGGAGGAAATGAGTTCCACGTGTTGACAAATAACTTCAATCTACCAAAGCCAAATCAAAGCTCCTTCCTAAACTCAAGTCGGCAATATTAAGGTCCTGAACGTCATCCAGTACACAGCTCTCTCTAACTCGGCCAAACCCATCAACAGGAAAAAAACCTCAATGCTTCCTCCcacctcttcttcctcctcctccacagaAAACCCTTAGCATACTCCCTGATTAACAGCAGACTCaatttcatttaacatttaaaaataacgaccgtgataaaataattttaaaatcacacataCATTAGGCAATGCAACAGTATAAATGCgagtatataattaaaaaaacactaaaatacaaGATCTGAAAGACTTTTCATAAGAAGTTCATATACACAAAACAGggaagagggggaaagaaaaaaaatgtaaacaaagtgaCTGTGACTGCGCCAACACAGGCTCACAGAGATTGCTCATGCTCTCCCTGCTCACAAGGGGCACCACCATTACCTGCACACAGCTGCCAGGCTGCTTCAGGCTTGTACACACTTGACCTGCTCACACCTGCTCGTGCTCTCGCTGGCAATGAGTAGCCAAGTCTCTATGCAGGAAAACACTGCTCTGGTTGCAGACATTGACTGGGCACCAGGCGGAGCAGACAGCGGGGACCGTCTACACAATGCTGTAGACTTCAACAGtatgcacacaacacacacacatgcttttaCACACTGACCCCTGGACACACAGCTCTGCATCACTTCCAGGTCCTCCACATAGACTAGCTTGCAGTTGCACAACACACAGGCAACAGGAGTGCACTCTTAATCAGGTTATTCCTACACTTTCACAGCAATGGCCATCCCAGGCCTTCCTGTACACACAACTACTCTTCTTCTCATAGTGCTAGCTGGCTCAGgagagccacacacacacacacacacacacacactcacacacaaagcTACCATGTTCATTCCTGTTCATTAACACTTAGGTCTGAAGAGGTCATTCTTGCACATGAAGCGTTGGTCTCTCTCCACCTGGCTTCACCACACAGCACGGCACCGACCTGCAAAGCAACTGCAATGCTTGAGTAAGAGTCCAGAGGGAGGAATGCACTGCTCTGCTGGCAACAGCCTGAAGGAAGTTTAGTTGAAAAGGCCCAGCAGATCAGCCAAGAAAGAGAGTGTGTTCAAGAACAGAAACACACGGCTCATTTTCAGCAAACTGAACAAAGGACTCgagagaaaggaaaatcaaaaaacaaaacaataaaaaaaagcatcttTTGAGGTCTTTAAACCACCTACACGGCACATTGAGAGCCTTCATTGTAAGGGTCTCATCTGCTACATCAGTCTCTACAGTAGAGAGAGACAGGGCTGTAGCTCGGCATGGTTTGACTGTTCATCATTGGAGTTGTACCCAACCACCCCAGCCCCTCCTCCCTGACACACCCTCTGTGGTAATTGCTGAGAGCTGATGAAGAACTGAAGGTAATGCTCTGTACACAACTGAaatttaatgtgttaattgttcATTTAATGCTTgaaggatatttaaaaatatatatatacaaaaaaaatatatatacaaaaaaaaaaaaagtgagaagCCCTGATCAGACAAATCTCTGAAGTTggcaccattttttttttccagagttcATAGATTCAGAAACGAAATAGGCagtttcaaattgaaaacaattataaaaaataaaaataaaaaacgctACAGTTTAAAAGCCCCTTTGTggtgacaatttaaaaacaaaaatgtagttATTGATCACAAAGGTACCTGCCAGGATGAGATGagtgaaaaaactaaacccTGAAGGAGAACCAGCCCAGAGCGAGTGCCTCGTCCTGCTGAGCTGCTCTTctactctccctccctcccccccagccTGGCTTCTCAGTGTCACAGCTGCCACGTACTACTGAAAATATTGTGCAAatgtcattatcattattactctAGAAACAATTGCAACGTGTATAATACAAtagtgtaaaatataaatatttatatatccaaaaaaaaaaaacgaaacaagtGTTATGCTTATTCTGATGAGTTCTGTAGGTATGCCGTGAATACCCACAGTGCACCACAGTGTAATGCAGACAAGGTCTAATTTCACTgcacaaagaaaacattaaaaaaaatccttttaacTTCGGTTTCAATGCTTCAAAGTAGTTTGATCTCCAATCTCTTTAAACCTGTGGTAGGGCAAATaccttttctttattcattAGATGAGAACAGTCTAAATGGCTTTGACTGAACGACTATTGCATGAATGCactctgctttaaaaacaatacataaaaagacCCTAAAGCCAAGTTTCCATAGCgcttaatttgaaatgatttggTACGTCTGATTAAAAACCACAAGGTgcgtgagagaaagagagagtggcCTTCACCTTGACAGCACCAAGACTGAAGACGGCAGGACAGCCTGACAGACTGCCACAGGGTCCCCAAGTCCCACGATCATCCCGGCACACAGACCATCAGGGGCGGAAGTGACTACGGCCAAAGGGAACCGAGTGCCAAGCAGGAGAGGAGGCTGCCATCTAGATCCCACACATAGGCAACAGCTGATCTTATCGCGAGAAGTGGAGTTAGTATATTTGGTATCCCCACACTCCTTACGGGAGAAACGGGAAAACGGACAAGTGTACGGGCGGGCCAGAGGCAGCAGAGCGTGACATTGCGTCAGTGAGGGAGAGCGTggagagggaaagggggcaGGGTCAGTGCATTTTAAGGCTCTGCAGTGGGCTAAGGCTTGTGTTTAGCTGCTGGAGGATTTTGTGAATGGGAAAGAGGAAGAAGTGCATCATTGGCAAGAACTGTAGAGCACCACTGTCAAAGTAGAAGTAAACAAATTTCCCACACCTGCATgcttaccaaaaaaaaaaaaaaatgtagaaaaaaatcCCTGCAGTATAAAACGTagtaatttttcttttttcctttcaaattccatttaaataaagtgtctTGTCttctagtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggtggcaGGTAGAAGAAAATAGATGAAGGgaccaaatacattttttttttaaaaaaggatcaGTGGTTCCACCCCATCAGATGGCTGACCCGAGCCTTCTCCGTCATCCTGCGTACCCTGCCGGAGCGAGACATGCCCAGATTCAGGGGGTCCCCCGCGGGCGCCAGGGTGTCGTCCTCCGAGTCGTCATTGTACAGCACTGTCCGGCGACCCTGGTTACGGGTGTTGATGCGCGATGCTTTGTGCTGCGCGGGACGCTTGCCACCATCTGCCTGCGGTCGGCCTTGTACCTGCTGGCACTCCTCCTGttcctgctcctcttcctcttcgTCTTCCTCTTCGTCTCcctcttcctcatcctcctcttcctcttcctcttcctgctgctgctccaaGTCCTGCCTTCGTGAGCGTTTGGCCCGGCCGCCGCGTCCTGCCGCCGCTGCCTGTACCGCTGCTGCCGCCCCTTCATCCCGCCGCCGTTTTCTGTTGGTGTTCTTGGCAGTCTTCCCCCGGGCTTTGCGTTGCGGGCGCAGGAGGGCAGCTTTGCTATAGTCATGGTCGCCACCGTCCACAAAGTCACATTCTGACCCCTCGCCGCTGCTGCTCCCGGAGGCCTCACTgtcagaggaggaggaagaggatgatgatgaggatgatgatgatgaggaggaggaagacttcgaggaggaggaggaggtggagccCTGCTTCTCGCTGCACGACACCTCGCCCTCCTCAGGACCCAGGCCTAGACGCCGCCTGGCCGCTGCGCTGAGGGACCGTCCGCCTCCATTGGTCAGTGGCCCGTTTATCAGAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107177 True 5834 TUCP 0.45 3 16997877 17004131

Neighbor

gene id symbol gene type direction distance location
AMCG00021421 fam46d,LOC100149701,LOC107572331,LOC107674891,LOC107753211,LOC107688579,LOC107564205 coding upstream 68200 16922571 ~ 16929677 (+)
AMCG00021418 tbx22,LOC103376188 coding upstream 112998 16875998 ~ 16884879 (+)
AMCG00021419 NA coding upstream 164612 16832282 ~ 16833265 (+)
AMCG00021417 NA coding upstream 191072 16797658 ~ 16806805 (+)
AMCG00021416 NA coding upstream 207025 16778582 ~ 16790852 (+)
AMCG00021424 sh3bgrl coding downstream 43482 17047613 ~ 17063209 (+)
AMCG00021423 NA coding downstream 62482 17066613 ~ 17071130 (+)
AMCG00021429 NA coding downstream 68220 17072351 ~ 17080517 (+)
AMCG00021430 NA coding downstream 78608 17082739 ~ 17097379 (+)
AMCG00021433 pou3f4,LOC108266720 coding downstream 221709 17225840 ~ 17226928 (+)
G85823 NA non-coding upstream 188563 16807806 ~ 16809314 (+)
G85784 NA non-coding upstream 348029 16647139 ~ 16649848 (+)
G85766 NA non-coding upstream 400975 16596201 ~ 16596902 (+)
G85763 LOC105929187 non-coding upstream 408466 16586317 ~ 16589411 (+)
G85760 NA non-coding upstream 413112 16584317 ~ 16584765 (+)
G85876 NA non-coding downstream 32441 17036572 ~ 17042575 (+)
G85903 NA non-coding downstream 82621 17086752 ~ 17087794 (+)
G85941 NA non-coding downstream 294028 17298159 ~ 17298813 (+)
G85976 NA non-coding downstream 455362 17459493 ~ 17459941 (+)
G85992 NA non-coding downstream 503395 17507526 ~ 17509083 (+)
G85787 NA other upstream 283839 16656644 ~ 16714038 (+)
G85764 LOC103366846,LOC106930986 other upstream 404904 16590181 ~ 16592973 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 924256 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 1565513 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 2924752 14069330 ~ 14073125 (+)
AMCG00021441 NA other downstream 466194 17470325 ~ 17473396 (+)
G86121 NA other downstream 1244359 18248490 ~ 18249686 (+)
AMCG00021472 NA other downstream 2042918 19047049 ~ 19055103 (+)
AMCG00021485 NA other downstream 2275634 19279765 ~ 19294779 (+)
G86407 NA other downstream 2495669 19499800 ~ 19501242 (+)

Expression


Co-expression Network