G85889


Basic Information

Item Value
gene id G85889
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 17069844 ~ 17071130 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU107200
TAAACTTTTAAAAGGAGAAGTTTTATTTTAGGATCATGACTGTTTTGAACACTGAATACATCTACAGTATTGTGAACTGTTTAACCTTCCAGGACACTCCTGTGTTACATGCACAAGCATTTCCACAAGCAATACCAAGGCACCACAGCAGGTGGCGACCTTCAACTGCATCTTCCTCTGCCAGCTGTGTGTGGGCCAGGATGCATCTGAAGTTTCTGAGTTCTGGAGCTCAGAGTTGACATTGTGACTGAAACCTGTACAAGCCAGGTCAGTGGAGTTTTGCTCTGTTTTTATCCAGTCTTCATGTGAGGCAGAGCTGCAGGCCCAGTGCTGAAGTGGCTGCtactgttatattaaaaaacaagactgCTGTCAATTCATGTCATGAAGGAGgggaaatagtttttaaatagaaGTAGCACTTTTAAAAGTGGCAGttcctctttctctgtgtgtgggggggttgatTCCGGTTTAGCTGTGTGCTTGCAGTACATGGATTTGACAGCATTTGTAGCAGAgggtaaataaacaaaacacatcataGTTTCGATCTTTTTTGGCCTTTGGTTCAGGCCAAAGCTGCACACCTGCACCTCTGTAGCAGACGAGAATGGATATTGTGCTGAGCATTCATGGTGATGAGCGAAATTATTAATAACTGCAAAAAAGCAGGACCTGACCTGCTGAGGAAACCCATGATTCCCTCAGAACCCCAGGATCTGCCTGCTACAATGCCAGCCTGATCCTGTAGCACACAGAAGGACTTCACCAACTACTAATATACTTACTTACAATAATTAGAAATACAATGTAGGTTTagaacacaaaaagaaaaacacgtATTTACATATCAGTCACAGGATGAAAGATGGTTTTACCTGACTtggaaaactttaaaatatgacattCTAGTATGTTATGTGgagtaattaattttaattgaataaaataattggtgAATTGATTAGTAAgttggttgtgtgtgtttcattgatCTTATTGTCAGATGAACAACGGAATTGCATCGATGTACAGGTTCCATGCCTGGCACCTGCAGCCCAGTGGTCCCAGCGCAGTGACCAGGTCACTGCAGATGAAGTGCGGCGGGTGCAGCGCcgatctttaaaaacacacagaatgtGTCTCAGATACAGTCACACCACTGTGCtcacaggtttatttttaaaacctgtttGTCGAGAAAAACGGAACAGATACAGACCTGAGGCTTACAATCTGGCTGCTGGTTCTGTTTAAACTGTCCTTGGAGAcatacagtgtaca

Function

NR:

description
PREDICTED: transforming growth factor beta-1-induced transcript 1 protein isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107200 True 1287 lncRNA 0.42 1 17069844 17071130

Neighbor

gene id symbol gene type direction distance location
AMCG00021425 NA coding downstream 27337 17035957 ~ 17042507 (-)
AMCG00021427 NA coding downstream 46705 17022545 ~ 17023139 (-)
AMCG00021426 NA coding downstream 48569 17003369 ~ 17021275 (-)
AMCG00021428 NA coding downstream 74288 16994546 ~ 16995556 (-)
AMCG00021422 chmp1b,LOC101476317 coding downstream 160861 16899376 ~ 16908983 (-)
AMCG00021432 rps6ka6,rps6kal,LOC103359561,LOC102207076 coding upstream 178502 17249632 ~ 17280801 (-)
AMCG00021437 NA coding upstream 385730 17456860 ~ 17475633 (-)
AMCG00021446 NA coding upstream 441432 17512562 ~ 17517667 (-)
AMCG00021445 NA coding upstream 447251 17518381 ~ 17539713 (-)
AMCG00021447 NA coding upstream 517408 17588538 ~ 17589461 (-)
G85837 NA non-coding downstream 246765 16822816 ~ 16823079 (-)
G85824 NA non-coding downstream 260524 16807806 ~ 16809320 (-)
G85802 NA non-coding downstream 312233 16691567 ~ 16757611 (-)
G85771 NA non-coding downstream 503823 16565717 ~ 16566021 (-)
G85716 NA non-coding downstream 598085 16471552 ~ 16471759 (-)
G85904 NA non-coding upstream 15592 17086722 ~ 17087718 (-)
G85905 NA non-coding upstream 16803 17087933 ~ 17088835 (-)
G85909 NA non-coding upstream 57334 17128464 ~ 17128665 (-)
G85938 NA non-coding upstream 177837 17248967 ~ 17290861 (-)
G85952 NA non-coding upstream 346867 17417997 ~ 17418548 (-)
AMCG00021412 NA other downstream 419904 16647139 ~ 16649940 (-)
AMCG00021387 NA other downstream 827189 16234317 ~ 16242655 (-)
AMCG00021304 NA other downstream 2998519 14057918 ~ 14071325 (-)
G85115 NA other downstream 3017947 14049974 ~ 14051897 (-)
AMCG00021302 NA other downstream 3118800 13948307 ~ 13951044 (-)
AMCG00021435 hdx,LOC107572093 other upstream 215119 17286249 ~ 17303470 (-)
G85953 NA other upstream 348474 17419604 ~ 17423418 (-)
G86010 NA other upstream 476032 17547162 ~ 17552766 (-)
AMCG00021444 NA other upstream 510112 17581242 ~ 17585441 (-)
G86049 NA other upstream 854969 17926099 ~ 17926708 (-)

Expression


Co-expression Network