G86240


Basic Information

Item Value
gene id G86240
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18659298 ~ 18663129 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU107652
ttaaagaaaaaaaatatataaaaatgactcTTTAAGGAGAACACGCGTTGTTTTAATCTATGAAGAGACCGTGAAGCTCTTTGTACTTCTTCTGTTGGTCCTGTGGTGTGGAACTGCCAAAACACAACATATTTCCCTCCTTCCATGGGGGGGCCCTGCAACAACACgcttttctaattaaaaaaaaaaaagaaagcctttTAAGCAGActggaaaataagaaattaacaatttgttttaaaataaacaaaaaagtgctttttatttcccatttctGTCTCTTGTGGGAAATTAGTTTTACAACAATGGCCTCTGCTGAGAcatctacagtttatttttgtttgtttttcagttttgttagttttttctttacaatgccttacaaatgtgttctttattttttctttttaatttatttttcttgtttacttcTTTTCAACCTGCAACATTATTTTCATGTGGCGCTTTGAGGAGAATGCCAAATTTCAGAAgtaaaaaattgaaattattcagtgaaaagaacaaaatcatGGCAAACTACCATTTGTCCATTGCCtatctttataaaacaaacacaaaatgtttttattgttttgtttgatttagtttttttctttgtttttcaattacaatataaatgattTGTGTCTTCTGAAATAGACTCtgcaggagaaaaaagaaaaaagagaagcaGAGACAAATGTACTACTTTACTGTGATTGTTTTGTTAAGAAAAAAGTGCATCTTTTGCTACAAattatctatcaatctatctactGTATCTCTCCATGAACCTGCACACTTACACACAGGGCTCCctgcgtgggtgtgtgtgtgtgcgtatgtgtgtgcgCCAGTCTTTGGGTTAGTAGAACATTGTCTGTGGAAAGGCCTCTTACTATCAGCTGTTGAGTTTCCTCACCACACATAGTATATCCGCCACGTCAATGGTTGTCTGTCTTTGCGGAATAGcacttttgttctttttaaaattatttacatctaatttttcttcaaaaacatataaaaaaaatgaatctattattttacaatgtaaggAAAAACTAGCTGAGGATTCAACTGAACTAACTGACAATTCCATGTAAGaaagattattataatttttttttttttttaagaaaagttCCAGTAAGCAGAGACAAAGTGGTCTGAACGCGCTGACAAGGGCCCTATGCAAATCAAGGCCAgcgcacatttttatttataaatatatataaatatcgacatatataaatatatatagggcTGCCATAAGGACGTCTCTGTCATTGACTACAGTCTGCAAACAGTCCCCTCTGTAAACATTCTGGAGCAGCTCATTCTGCACACGATAGTAGGCCTTGGACTGACGTGTTTATAAGAGctctatatgtatgtatatatatatatatttaatatttatatatatatgagtatgAGATGTACACCTGCTGATTGTGCCATGTGCCAAATTAGAACCAGcaaacttgagaaaaaaagtatttttttttgtgtgtaaatttgttctgtattttgatAAACATTCTGTttacttgtgtttattttctgttaatatCAGTTTGTAGTTTGATGTCAACCATGAGGGGTGAAGTCCCAGTGCAACTAGTCGAGACATTCTGTCCCACTACTCTCACTGACCCACATGGGCCCCTGATAGCATTTCTGAGAATGCCTCTTCGGGAGGAGGCGCCCCCTGCAGGACCAGACTGACCACAGAGATCAGAGCAGGGAGAGGATGGTGGGAGTTGGGGGGGATAGTGGGCACTCAGGTAGCCAGAATAGgggggctctgtgtgtgtgtcaggtggGTTAAGAGGCAATGTGAGGCAGCAAGGCTGTACTGTGGAGATGAGAATGGATTTTCAGTAACTGGGCGGGCGGCCTGCCTACACTGTGCTGAAGGAGTCCCCTGGCCTCAGCTATCAATGGAACAGGTTCCCTGTGCTCATAAGAGATTCAGAGATGAGCAGAGAGAGTCCTACCACCTCACAACCCCCCAGCCCCAGTTTTCCCCAATGCCACATTTGTCagtcctgtctgtgtgtgtgtgttcagtgtttccCGTTACCACATTAGAGTCACGGTGCACCCAGAGAGAGCACCATATAGCTCAGCACACAGACTGTCAGCCAGGAGCAACTGCTGGGGTAAAATAGGAAGAAACACCATAGTCAGGGAGGCGGGAGAGCATGTTGCCTCAGTCAAACTCAGTCAGTACAATAGAGTAGTACAGTAGGGGCTGTGTCAGTAGTACAGGAGGGAGATGTCAGCACTGAGCAGTGTGTACGATAAACAACATGTGCTCTTccctgatacacacacacactccctcacttacatacactcacacaaacacacacacgcaaaagTCACTTGTTACTGTGGAGTTTGTTGTGTTCAGCTGAAGAGGTACTCAGAGCTCAGTGGCCTGGGTGTGAATGGGTCTGATGTGGAAGTCTATTAATTCCACACAATTTAAGTCATCAGCCCTAAATTGGGGCTGGTGAGAGGCCTTGTGCTGGCACTGTGATGGGCTGAGTGGCATGGGCCCTTTGCAAAGCTGGTTTCTATCTGCACTCAGCAGGCTGCTGATTCTGATTGTCTGTTAGCTGGAAGGGGAAACGACTGCAATTTAATTGTCTGTGTCCTTAGATGGTCCTCTCCTGAGAGGCTGAGATACAGCAGCACTATCAAGGGAAGGGGAGACTTGAATACATCATGTGCTGCCCACACTGATGGCCTGACTCAGAGTCTCTCATGAAAGGGAATTAGAAAGGCAGAAAGGAGGATGagatgcagaaagaaaaaatatatagaaaaagtATTTTAGAAATAAGAGTGCAGGGCCAGGTTACAGAGTTGGCAGCAATGCAGATTAGAAGAATCTGATAtgttcaacaaaacaaattgtgacAGATCTAAAGCTTCTCTCCTACTGTGATAACAAGACAGCTATGAAGAGCAGTGTCTCTGGTGGACATGTTAAAGTGCAAGTGCCAAAAGCAGGAGCTCTGGTGCCAGACTCAGAGGTGGACACAGGACCCTTTGGGTTGGCCAAACTGGCAGTGGCCAGCAGAGTGTGACTGAGCCACATTACTGACTGAGCACCCACCACCACATCACCACCCAGAATAATCAGCATGACAAGCATCATAGAAAAACTGAGATTCTGAAATGAGCATTGAAGTGCTAtatgaactttttttttaaatatagaaatagtAGGCTATATTTAGAATACTTCTAAAAAtcatagtaatagtaataatatgtttattgtAGATATGAAACACAAATACTCTCCAAGTGCCAGTAACATTCAACCCAGTATCCTTTCTCTGCttttgacagacagacaatgcAGACGTGTTTGCTGAGGTAGGTGTTGAGTGTTTGGATAGGAAATCACAGttagctgtctgtctgtttatgcATAGACAGACAGACGTTAGGTAGGCAGGAAGCAAGGCTCATCCTGACTTGGCCTTTTTTCAGAGCTGTTTGAAGGAGATTAGCTGGTGTTGCAGCACAGTGTCTGGTCTTGTGGGGGGCACTCTTTGAGGTTTTTTGGGGGACAGCCATGCTCAGCTGTTGCAGAAGTGTTAGCGTGAGTATGGTCTGTGACTACAATGAGAGTTTGTGGGAACAAAAAAGTTTCTGATGcttaaaaatattgttaaaaacccaaaacataataacattttcagaacaGCAAGGGTTTGGTATATTTTTCAGGTTTgtaattcaaaaaataaaaataaaataaaaacaacggTACTGGAGCTGTGTGCGAATCACCTaccttaaatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107652 True 3832 lncRNA 0.40 1 18659298 18663129

Neighbor

gene id symbol gene type direction distance location
AMCG00021469 NA coding downstream 51145 18595142 ~ 18608153 (-)
AMCG00021468 NA coding downstream 83864 18566104 ~ 18575434 (-)
AMCG00021464 LOC101062031,LOC105905861,LOC108413288,LOC106612212 coding downstream 181354 18477072 ~ 18477944 (-)
AMCG00021462 NA coding downstream 379513 18249018 ~ 18279785 (-)
AMCG00021461 NA coding downstream 418719 18232571 ~ 18240579 (-)
AMCG00021467 LOC107748936,LOC107689138,LOC107733406,LOC107663109 coding upstream 94 18663223 ~ 18684421 (-)
AMCG00021471 LOC106604239 coding upstream 99799 18762928 ~ 18772587 (-)
AMCG00021470 nlgn3 coding upstream 134789 18797918 ~ 18809251 (-)
AMCG00021474 NA coding upstream 329595 18992724 ~ 19026083 (-)
AMCG00021476 LOC107584322 coding upstream 395755 19058884 ~ 19073801 (-)
G86222 NA non-coding downstream 27831 18592640 ~ 18631467 (-)
G86225 NA non-coding downstream 35708 18622563 ~ 18623590 (-)
G86203 NA non-coding downstream 109541 18549444 ~ 18549757 (-)
G86154 NA non-coding downstream 335273 18323491 ~ 18324025 (-)
G86029 NA non-coding downstream 1025312 17633755 ~ 17633986 (-)
G86244 NA non-coding upstream 87543 18750672 ~ 18811147 (-)
G86249 NA non-coding upstream 255125 18918254 ~ 18918531 (-)
G86253 NA non-coding upstream 342487 19005616 ~ 19006432 (-)
G86285 NA non-coding upstream 489876 19153005 ~ 19153285 (-)
G86324 NA non-coding upstream 595428 19258557 ~ 19258855 (-)
AMCG00021460 rhog,LOC101076287,LOC107396352,LOC104923191,LOC105923887 other downstream 410404 18241237 ~ 18248894 (-)
G86049 NA other downstream 732590 17926099 ~ 17926708 (-)
AMCG00021444 NA other downstream 1073857 17581242 ~ 17585441 (-)
G86010 NA other downstream 1106532 17547162 ~ 17552766 (-)
G85953 NA other downstream 1235880 17419604 ~ 17423418 (-)
G86241 NA other upstream 158404 18821533 ~ 18909908 (-)
AMCG00021483 NA other upstream 596305 19259434 ~ 19274440 (-)
G86327 NA other upstream 612225 19275354 ~ 19278023 (-)
AMCG00021495 acbd7,LOC106595206 other upstream 782957 19446086 ~ 19468782 (-)
AMCG00021514 NA other upstream 1618023 20281152 ~ 20284979 (-)

Expression


Co-expression Network