G86367


Basic Information

Item Value
gene id G86367
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19392097 ~ 19394874 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU107802
tacaaataaacatggagAAGGTAAACGTTATTGAATAATGTGCGTTCAGTCACAGGAGACACCATTAAAACGCAGAGACAGCCAACAATACCCTCTCCGACTGGCGAGGTTACAGAGAAGGAAGAGGTTTTTGTGTGAAATTCAGAAGATTAAATCATGAACAATCAAAGCAACTGAAAGAGTAAAACGCAGGGAAACGACCGCAGGACTAAACTGAAattgggacttttttttttttttcttctacataATTCCAGATTTTGCGAAGGATGGCTTCAGTCACTCACCAGTAATACGAATCCAGTCAGTGTAGAGATGTTAGTGGTGGTTTAGTGGGACCTTATGACCCGTACATTGTTTCACAGTGAAGATGATGAACACAGCACAGACTGGGGCTGCTGTCCACTGAGGCTGGAGTCCGCAGCCCCCCAAGAAGAGGGATCGCACCGCCCCAATCTCACTTCCCTCGCACACCTGGCCTCGGTTTTCTACGGACAATCAACAAATCTGCTGTCCGCGATGTCTGTTCTATCTGTTCATGTAAACGATGCTCAAGACCCAAGGAAATGGTATTCTGCATTTCTGCTGCAGTAGCGCTGCTCTCTGGGTCTCAGGGATTATGGACGGTTGCTGTCCAGGGTTCTGATTATGGCTTCTGTGCCAAACTGTGCTTCGGGTGTTCAGTCAGAAGAGACGGCAGTGAGATACCACAACATGTGACCACAGTTCAAATGCAAGGGCTTACAATTCACTTTCTTCTGGTACAGAGAGCACAGTGAGCTAAAGGCAAACAGGACCAGATCAAATCACCTGAAAAAAGTACACGGCTCAGCCTTGTCTCACAGTTTGACCTTGTTTCTcctaaaagtaaaatgttgGACAACGAAGAGGCACGATCGAAAAgaaatttattatttaaattaagtacaaaAAATGTTTGGAAACATTAATACAGAATGGAATAATTggcaaataaaattaatatctgATGTACAGAcaatgcacgcacacacagtgtCAGGGAACTCCAGGCAGCAATACTAAGCGCACTGCTGTGAGTGACAGATCTGGGTCTCCTATTGCACAATAAGGaagaagaacacaaaacaacacaaatgaccCCTAAAGTGGCGAGTTTATACTAAGGTGCTTCATCTCACTCCAGTTTTCACAACACAAACGTAGTGAATGTAAAACTATTGAGCTCAGGAGTGACCAGGTTAAGAATCTAATCTAGGGTgagtaaaacaaatcaattataataatcctAATTTGCTTTGGTCGTCTCCCACGGTTTGGCAGAATAAACATaaccttaaaaaacacaagcagcaaAGACCTACAGATCTATCAAATTGATCACATTACATTCTTCGGGAATTTTAAGAAATTGGTACATTACTGTGATATGCGTACATTTTGAGGTATAGGTTTCTGATTGATTAAAACCAAACAGTATATTTAAGTTAATTAGTGACAGGAAATAGAGCCATTAAAACCACATTCAAACACTGAACACAGTAGATGAAACAACcacaagcaaatacaaaatacacgtACGTGGGATCTGTTGTTCAGTGCTTCGGTACTTTAAACTAGGACTCATATTAGTAGAATTTGTATCCAAAAGTACGATGTAAATTCCTCAGagggaatgaaaaaacaactaaaaataagGTTTGTTGTTTGTGTAGATAAAAGGCTTCTTAAAAGGTCAGCAAATCTTGAGATTAAAAGCATTCAGCACGATCTGTAAACAGAAACATTCAGGTCCTGTAAAGGGCCGGGCAGCAGCGCCCAGCATGGCCTCCTCACTTCCATGAGAAGAGACGCTTTCAAAGCATGACAGTAAAGCTGGACGAACGAAGGCACAGACAAGACCGATCACCGCCGAAGCTTTGCACAACTATGGCTTCTTCTGATGTTTCACAggattcaaaacaaacagtaataaaaagGCCGATGCTAACATTAAGGGGCACGTCCATCCCAAGCCGAGGCAACATTTCTGCCACGAGGCAACATCCAGATCAAACCAGGCGTCTTTCCTGCAGTGACTTCAGGTGTGTTAACCCAGTTGCCCTGCACTGACAGGCCTGTTCCAGTAGTTTAACCCATTTTAGTCGGACACATCCTCTGTAAACATTACAACAAATCTCAAAGAAAAACTCTCTCCTGGTTATAGTACCCAACTTAAATACTCAGAGGGTCACACGTTCTCCTCCCTCATGCAAGAACCACAAGTTTTACACCATGCTTTCATGTGTGCTACCAAAAACAGTGGTTTCAGCAGATTCCTGGAagtgatctctctctctgtctggagCCTCCCTAGGTCAAAGGCTGTGCTTGTGGAAGAAAACTGCCGCCCAAGACCAGCTGCTGGGATGGAAGTGATGGAGTAGATGATACCGCTGACAGAGCAGGGGCAAGACGGTCATATGTTCATGAAAGCTGCTCAATAAAGGGGACAGAAAAGACCGTAACAAACAGAACAGTAAGCCATGTCTCTCTGTAGCTCTAGGCCTTTGGAGACGGATGGCAGGATGGAGTGAAGACGCACAGAAGACACGGTCTCAGCCCCCCAGCCTCGGCCCTGGAGCCGCACTCAGGAGGGGGTGAGTCCCGGGCTGGTCATCTCTGTGGTGGGGCTGGCTAGGCACTCGCTGGACTTGAGGCTTGCTAGGGACTTGTAGCTGGCCACGGATGTCAGGGAGCCACACAGGCCCAGCAAGGACGGGGTCTCCTCCTTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107802 True 2755 lncRNA 0.45 2 19392097 19394874

Neighbor

gene id symbol gene type direction distance location
AMCG00021491 NA coding upstream 343 19384029 ~ 19391754 (+)
AMCG00021488 NA coding upstream 49273 19341820 ~ 19342824 (+)
AMCG00021484 NA coding upstream 84973 19299536 ~ 19307124 (+)
AMCG00021479 NA coding upstream 144419 19232128 ~ 19247678 (+)
AMCG00021478 calb1,LOC107704882,LOC107700706,LOC107588486 coding upstream 171823 19202878 ~ 19220274 (+)
AMCG00021493 NA coding downstream 27850 19422724 ~ 19446623 (+)
AMCG00021492 NA coding downstream 65590 19460464 ~ 19465577 (+)
AMCG00021496 NA coding downstream 75367 19470241 ~ 19471029 (+)
AMCG00021501 NA coding downstream 219321 19614195 ~ 19622221 (+)
AMCG00021505 NA coding downstream 518658 19913532 ~ 19918822 (+)
G86323 NA non-coding upstream 133242 19258458 ~ 19258855 (+)
G86309 NA non-coding upstream 165329 19224453 ~ 19226768 (+)
G86284 NA non-coding upstream 238815 19153015 ~ 19153282 (+)
G86229 LOC106604239,LOC107733406,LOC107748936,LOC104952214 non-coding upstream 712221 18679113 ~ 18679876 (+)
G86227 LOC107748936,LOC107689138,LOC107733406,LOC107663109 non-coding upstream 727564 18663193 ~ 18664533 (+)
G86387 NA non-coding downstream 53855 19448729 ~ 19449107 (+)
G86419 NA non-coding downstream 191115 19585989 ~ 19587369 (+)
G86454 NA non-coding downstream 434942 19829816 ~ 19837813 (+)
G86455 NA non-coding downstream 457495 19852369 ~ 19894619 (+)
G86529 NA non-coding downstream 757371 20152245 ~ 20152766 (+)
AMCG00021485 NA other upstream 97318 19279765 ~ 19294779 (+)
AMCG00021472 NA other upstream 336994 19047049 ~ 19055103 (+)
G86121 NA other upstream 1142411 18248490 ~ 18249686 (+)
AMCG00021441 NA other upstream 1918701 17470325 ~ 17473396 (+)
G85869 NA other upstream 2387966 16997877 ~ 17004131 (+)
G86407 NA other downstream 104926 19499800 ~ 19501242 (+)
G86601 NA other downstream 947736 20342610 ~ 20401249 (+)
AMCG00021517 gatad1 other downstream 973279 20368153 ~ 20371536 (+)
G86616 NA other downstream 983549 20378423 ~ 20380424 (+)
G86688 NA other downstream 1272596 20667470 ~ 20667927 (+)

Expression


Co-expression Network