G86477


Basic Information

Item Value
gene id G86477
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19912537 ~ 19918803 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU107936
tgctttatttggaGTAGCTACAGCACATCGATACATTCTGAAGTCATAGGAAAAGCTTAGTTCATTTTGACAGAGTTGTATAGTTTGTATAGCGCTGCTGTGGTTTGTAATAATGTAGTTGCCGAAGTGAAACAGGGTGTGATCTCGCCTCTCGCCACAGAGCTGAAGCTGATGATAACAGAAGCTGGCCGGGTATAAATCCTCGGAATTAAACTGTTCTACATCTGGACATGTTCGTATGAGAGCGAGGGGAGATCGCAGGgcaggatttaaaaatacagattgtgTGCAATGTGACTTACTGTTTTGTAACTGTTAACGACTGAATCCTGCCAGAACTGGACAACCCAAGCAGGTCGTTATTAATATGCATTGATAGATTGCCTGCACTTCTAATTATATAGATTTAATGCCCTTATTGTGGTTAAGAAATGAAAGCTGAGAGAGCAGGGCAAGGCAAGCTGGTTCTGACCGGGCCCCTGCCGTCGCTTCCTTCGGAGAATCAGAAGTAATGAGATTCCGACAGAGGGCCGCAGAACTTGAAGGAGTCGACAACATGAGATTAAATcatcttaaatgtttttcattaagtgaGAAAGGTTGTTGTGATTTacagcaaaatgcatttttaataacagCTTCACTGCGACGGGTCTGTAAAGCCGTTGAAATTAATGAGATACATCTAATATTCACTCTCATAAATTGCCGTTCCCTTCGTGCGTCCCTCATTGTCAGCTGCAGCAGACGCATATATTATTATGAGCTTTATTTGATTCTTGCAAGGTGTTTTACATGCCGTGATCAAACAGACGTGGGATCGCTCCTGTGCTGAAGCTTCCCTCTCTGAGTCGCTGTGTCTTTATCTTCACAGCAGGCTGTGGGACTGAATGCAATATTCTGCCTGAAAAGgtatataaataatgtcttTGAGGAGAGGAAAGCCTGCAGTGTCTGacttcctattattattattattattattattattattattattattattattattaatgttataattattttatcagctgtcagatatatttatttgtttgtttatgtatttctcaCAGCAGTTGTCGTCGGTTGTGTCAACATGATCGATCGAGGGCTGTGTCCAGAGGTTTGAGCTGTTCTGTGAATGTATGCTGCATTGGGATGTCGCTCTGGCCCGGGGTCTGCTCCTCTCACACGCACTGCTGTCAAGCGTGTCCTGCTTCACAGAGCAACACGGGAAGCCCCTTCGCTCTGAGCCATGCAAATTGCGCGACTTGTGGATGCGGGACTGTGGGGACTGTGGCTGCGTGAAGACTGGCCTTGCGTGTGGGTTTCAAGGTCCCAGGCGTGGCTACTCAGAGTGAAGGGAAAGACcagagaaacacaacacaacacagctatAAAAAACCCTAACGCTGACTTGAGTGCCTAGAGGACGAGAGGCCGGCTGCTCTTGTTGTCCTTCCAGTGCGGCGTCTCCACCGACTTCCTCTCCCAGCCCTGGCGTATGCGCATGACGACCCTGTCCACGCAGGGCATTATGAGAATGAACTTGAGGACCAACACGATGCAGGGGACGACCAGGGACAGCATGTAGGCGGGGGGCAGGTAGAAGTGGTAGTAGTGGGGCATCAAGAACTTGCTCCAGCCGTAGAGGAAGGTGTGTGTGGTGCAGAGCAGCAGTGTCAGGTGGCCCAGCTTGGCTGCACAAAGCTGAACTCTCTCCAGTTGACGGCGTTGCTGACAGAGGGCAGAGATGTTATTCCAAGGAGGACGAACAGTCCAAATCCCAGAATCCCCAGCGATAAGTAGGAATCGCCTCTCCAGGCTCTGGTGTAATCAAACGTGATTGTATTATTCTCCCTCGCCTGAAAGATAAAACACATTGTCAAAGGGCTGGGGGTGACAAGGACAGAGTATCTGCCTGGAGGGGAAGCGACCACTTCGATGTGTAGAGTGCTCTGTGAGCTGGACCAattaaagattgattgattgattgattgattggtcaaggatttacttattttatgtttttcttggaTTACTCAAGCCAGTCCTACAATTCCTGATTTGATTTCATTGCCGGGACCCCTGGCCGAGCCCAGAGAGCGTGTTCAGTTTCTTATTTCGCAGCAGCACCAGGAGACTGGAGATCAATACTGATTGAGTACCTGATGAAAGGTGGACAGGTGATTTTGCTGAGGGGAATAAGGAGGAGGAATAAGCCCCTcctcctgacacacacaaaattacatttaaagttcaGAAACAAGGTGCTGCTGAGGAGCTCACATAGCAGACAGGAGAGGACAGTACTGTGGCATGGCTGTGTGACGGTGGCATGACCCTTCAGAAGCAGACTGAGCATCCCCCACTGAGTATCCCCCACTGAGCGTCCTCCACTGAGCATCCCTCCCGAGTAACTCCAACCCTGATAGCAGAAGGAAGATGACTGTACATTGAATGGCTGCAGCTCAACCCCATTTTCACAAATAAGGAAATCAAGACCAGTCGATCCTTGGGCTTAAATGTCCTGCAGTGTAGCtgcaatccatccatccatccatcatccatcaatccatccatccatctatatatcatctatccatccatccatcccttCATCCTGCTCACCTGAGTCACGGTGTACTTGTACGTGTTGAACCACACGTAGTACCGCGTGGGGATGATCAGGGTGTACAGGACGTGCAGGAAGGCCAGGGCCAGCGCCACCAGGCCCAGCTGCTTCCGACACAGCATCCAGCGGTCTAGCCATTCTGGGAAGCGCTTGTACTTGGTGCCGTTGTGCAGCTGCAGGAAGCCGGCCAGCGCCCCGGGCAGGTAGCACAATGCCAGCATGATGAGGGACACGATGGGGAAGACACGGTTGGCCAGGGAGATCATGATGCGGAAGGAGTTGTCATTGCCCTTGGTGACGCGCGTGTAGACGACGTCGCTCACCACACAGTACAGGAAGAGGACAGCAGTGAGGCCCGTGGCGATGTACATGGGGATCCTCCACAGGGGGAAGAGCTGCAGAGGTAAGTCTTCGATCTCCCTGGCGGCCAGCAGAgagcccttgtccagggcagtGAGGTTCAGGCTGTGGGCAATGTCCATCACCATCTGCTTGGATTCGTAGTCGTCTCCACAGACGTACACTGTCTGTTGGCGTCCAGCCCCCCGGACTGCAGGGCCCAGGCCGACACAGTGTTGAACGCTTTGACCACGTGGGCCGCAGGGACCAGGCTCTGCAGGTGCGCTGCGTTGGACTCCGGGTACTGATCGAGCTTCAGGTTGTTGCTGACATCCACCAGGACCTTTCCCGCCAGCTCTGAGGAGAACTGGCCGAGGAACTCGTAGTTCTCGCGGTGCACGGCGACGAAGATGACCCGGGACATCTGTGCGGCATCCACATGGCCGAACACCTGTGCCTCCTTAGGGATCAGGCTGGCGTTTTCGGGGCTCCGGCTCCCGAACACCACGGCATGCCCGGCCTGCAGCAGCCGCAGCCCCAGAGAGCGGCCAAAGTCCCCTGTGCCGAAGATGCACACGGTGCCCAGCTTACTCTGTGGGCCGGGCCGGGGCGCAGTCATGGCGATGGAGTTGCTGGTCATCTCTGCAAGGAGACTATGAATAAATTACTCCATAGGTATTCTCCAGCTCTGACAGGGAAAAGTCCTCAAAGCCTCTCTCAGCTGCACTCCTCTGCTCAGCACTGCTTTTTGTATGCGCTCTGGCCAGCCCCCCCGTGAAGGCGTGCCT

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU107936 True 3765 lncRNA 0.51 4 19912537 19918803

Neighbor

gene id symbol gene type direction distance location
AMCG00021508 NA coding downstream 2864 19905943 ~ 19909673 (-)
AMCG00021504 NA coding downstream 121365 19786814 ~ 19791172 (-)
AMCG00021503 NA coding downstream 137186 19768303 ~ 19775351 (-)
AMCG00021502 LOC103376377 coding downstream 301641 19587219 ~ 19610896 (-)
AMCG00021498 NA coding downstream 327577 19523528 ~ 19584960 (-)
AMCG00021509 NA coding upstream 32214 19951017 ~ 19962097 (-)
AMCG00021516 NA coding upstream 287519 20206322 ~ 20207476 (-)
AMCG00021515 LOC106570209 coding upstream 356255 20275058 ~ 20279375 (-)
AMCG00021519 krit1 coding upstream 368518 20287321 ~ 20297650 (-)
AMCG00021521 NA coding upstream 452997 20371800 ~ 20376570 (-)
G86472 NA non-coding downstream 134 19903996 ~ 19912403 (-)
G86474 NA non-coding downstream 11701 19900458 ~ 19900836 (-)
G86386 NA non-coding downstream 464043 19446417 ~ 19448494 (-)
G86324 NA non-coding downstream 653682 19258557 ~ 19258855 (-)
G86285 NA non-coding downstream 759252 19153005 ~ 19153285 (-)
G86530 NA non-coding upstream 233417 20152220 ~ 20152767 (-)
G86598 NA non-coding upstream 406890 20325693 ~ 20339742 (-)
G86639 NA non-coding upstream 436267 20355070 ~ 20356479 (-)
G86648 NA non-coding upstream 474241 20393044 ~ 20394206 (-)
G86689 NA non-coding upstream 693860 20612663 ~ 20614108 (-)
AMCG00021495 acbd7,LOC106595206 other downstream 443755 19446086 ~ 19468782 (-)
G86327 NA other downstream 634514 19275354 ~ 19278023 (-)
AMCG00021483 NA other downstream 638097 19259434 ~ 19274440 (-)
G86241 NA other downstream 1002629 18821533 ~ 18909908 (-)
AMCG00021460 rhog,LOC101076287,LOC107396352,LOC104923191,LOC105923887 other downstream 1663643 18241237 ~ 18248894 (-)
AMCG00021514 NA other upstream 362349 20281152 ~ 20284979 (-)
G86600 NA other upstream 410619 20329422 ~ 20335304 (-)
G86640 NA other upstream 439498 20358301 ~ 20360255 (-)
G86649 NA other upstream 476809 20395612 ~ 20397783 (-)
AMCG00021534 bet1,LOC107669829,LOC107722155 other upstream 803081 20721884 ~ 20724880 (-)

Expression


Co-expression Network