G86648


Basic Information

Item Value
gene id G86648
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20393044 ~ 20394206 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU108154
GCAACACGGAACCTGTGGCAacttaatgttttacaaataacacATCCACCGAGGAAACCGCAGCAGTGCGACCCAAGACAGAAGGACAATCATGTACATGTCttcatacaaaaatacaccTTTATTGTTCCTCACAGGATCACGACCACGACAGCAGACTGTCATTCGCAGATTTCGAGAAAGCCGTCCGGGACGAAAATCTCCTACTGGAGGCTTTTGGGACCTGCCTTCCTGATGCCAAGAGTATACTGGCATTTGAAAAGAGAGCGTTTCAGGTTACTTCGGACAGCTAAATCCGTCACAGAGAAGTGTTGCCATGACTGTTATATTCAAAACTTTTGCACAATTCTTACACCTATTTGAATTCAAACCATTTTAATGTTCTGTCTAATTTTCTttcacataataaaacaaatctgtccaTTTaccttgtgtgtgtctgatgcAACCCTTCGGAATTCAAACCATTTAATTTTGGGGATATTTCTGTACAAACACTTGTTTAATATCTTTTCATGTGgcaaaactaatttgttttagaTCTTAAATAGAACACTGTTTTTGTGAAGTAGTGATCCAGTCCTGCTGGTTCTTTCCAAATCGGCCAAATAAACAAGGCCTTCCCTGGATGCTTCACTCTCTCGGCAGTTCTGCACAGCTGCTCTCGATACTCCATCTGACTCTCGGCTGCGCAGTGATCTGGTTACAGCTGGACTCTGAGGTTCATGTGGACATCTGAACACTGTCTGGACCCCTGAGGGGACTCAGGACCAAAGGCCACAGTGTGGCCTGTCCTACTCCTGCCAGGACTCTGTGTCTCAGCCCAGGGATTCCTCGTGCCACAGTGCTGTTAAATCCTCCTGCGGGGCTTCGGGGCATCCTTCTTCTTCTCCGCAGCCTCTGACTCGGCAACTGAAGAGATCTGCACAAGTACAAAAGAGAACTGTTTGAATAACTGGTTAACAACGGGAGGGATGCTGTAACTCTGTAGAAACGACTGTGTATGATATAGGAAAAAGGCTGACCAATATCATACATACATCATATCATATATAAAGGGTATAATCA

Function

GO:

id name namespace
GO:0043226 organelle cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation

RNA

RNA id representative length rna type GC content exon number start site end site
TU108154 True 1068 lncRNA 0.44 2 20393044 20394206

Neighbor

gene id symbol gene type direction distance location
AMCG00021520 NA coding downstream 3600 20378423 ~ 20389444 (-)
AMCG00021521 NA coding downstream 16474 20371800 ~ 20376570 (-)
AMCG00021519 krit1 coding downstream 95394 20287321 ~ 20297650 (-)
AMCG00021515 LOC106570209 coding downstream 113669 20275058 ~ 20279375 (-)
AMCG00021516 NA coding downstream 185568 20206322 ~ 20207476 (-)
AMCG00021524 fam133b coding upstream 8577 20402783 ~ 20412472 (-)
AMCG00021523 cdk6,LOC106588946,LOC107567973,LOC107667775,LOC107558583 coding upstream 20324 20414530 ~ 20435051 (-)
AMCG00021525 cdk6,LOC107667775,LOC107558583,LOC107722162,LOC107567973 coding upstream 50337 20444543 ~ 20460278 (-)
AMCG00021531 calcr coding upstream 223864 20618070 ~ 20638956 (-)
AMCG00021533 NA coding upstream 295141 20689347 ~ 20693224 (-)
G86639 NA non-coding downstream 36565 20355070 ~ 20356479 (-)
G86598 NA non-coding downstream 53302 20325693 ~ 20339742 (-)
G86530 NA non-coding downstream 240277 20152220 ~ 20152767 (-)
G86477 NA non-coding downstream 474241 19912537 ~ 19918803 (-)
G86472 NA non-coding downstream 480641 19903996 ~ 19912403 (-)
G86689 NA non-coding upstream 218457 20612663 ~ 20614108 (-)
G86736 NA non-coding upstream 427426 20821632 ~ 20822603 (-)
G86738 NA non-coding upstream 428794 20823000 ~ 20823964 (-)
G86739 col1a2,LOC106570460 non-coding upstream 429816 20824022 ~ 20854294 (-)
G86740 NA non-coding upstream 434053 20828259 ~ 20830922 (-)
G86640 NA other downstream 32789 20358301 ~ 20360255 (-)
G86600 NA other downstream 57740 20329422 ~ 20335304 (-)
AMCG00021514 NA other downstream 108065 20281152 ~ 20284979 (-)
AMCG00021495 acbd7,LOC106595206 other downstream 924262 19446086 ~ 19468782 (-)
G86327 NA other downstream 1115021 19275354 ~ 19278023 (-)
G86649 NA other upstream 1406 20395612 ~ 20397783 (-)
AMCG00021534 bet1,LOC107669829,LOC107722155 other upstream 327678 20721884 ~ 20724880 (-)
G86808 NA other upstream 669652 21063858 ~ 21083570 (-)
AMCG00021569 NA other upstream 1272196 21666402 ~ 21671315 (-)
AMCG00021619 NA other upstream 2760981 23155187 ~ 23160991 (-)

Expression


Co-expression Network