G86685


Basic Information

Item Value
gene id G86685
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20612626 ~ 20614365 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU108195
tttctattgaaaAAGCTTTTCACAAAAGCTGGTCAATGGTGCATTTATAAAAcagggatttcttttttttttagacatcAACAATCATGTCAGTCAACAtaaaagagaaacagacacaggcagcaaatatgaaaaaataataatatatatacggAATAAGAAATGGTAGCTTCCACAGGGTGTATACTGGCAGAGTATTCCCACCAGGGTTTCTAGTACATTCTatatacagtgtacagtacaaCTTAACAACATACATCATATCCAGAATATACAGTAAATGATCGGTCAGAATATAGAATCGCTTTTAGAATACAATGGGCAACACAGGTAATCAATGCATGTGTACAAGATAGGTTTCAtcttttcaaaatcataattCGGCACAGCCCTCAAATAAAGGATAACAGAGCgatgtttaatgtattgaatgaacacacaaaacagattgTGTTGAATGAGTGCCGAGATGTGATCCGCACCCACCGGTGTTTTCATGTCGAGGGCTTTCGTGACACGAGTTCCATGAGGGATAATTGTAGCGCCTATTGTTACAATGATATTTTTCTTTAGTgcatgtattgtgttttatttttgtcgcAGTGTTATTGTATTCACTGAACCGAGACTTGAATGTGTCATTAGCAAGCGAGCCCGGGCTGATACAGAGAATTATAATCTcccacaaaataatacattcaaatacaacaGTGTGAAcgattaaacaaaaataaacagacaaatgtcACATTATAGGATAAGGGACCCATATTATATACTTATGTAATAGTAAGTAATAATGGtacactgaattaaaatgtatgattgttTTGCTGCATGTTCATGTAATCCAGCCAATCAGAAGCGTTCTGGTCAATATTTCAATAACAATGATCctaatacttttaataatggatttataATTGGTTAATCTCTTAATCCATTCAAACATGAAGTGAGTGCCTTATCTATCAATCAAGATAGAGAGATATCAGTAATAGTTCTTCATCCAGCACACAACATTAGGAACTGATGCATGggaatgaatgtgaaattaatctaagAGTAAGATGCTCATTTCTGAACATCTGTATGGATCTCTTCTGTGGAAAATTGGGAGAACCAGCTGTGGCAATCTTATTGTACGAAATATTATCTTAAGAAAGCATCCACCGGTGAGTCAAAGtcaaatacacagtatttaATTTGCAATCCCCATCTGCATCAGCAATGATGTCTGCCACCTATGATTGATAATGTGGAGTTGATAAAGATAAAGAAATTGTGTAACAGAGTGTTGCCAAATGAtgcttgataaaaaaaaaacacacacacaaaacaaaaaacagacaagtaaatcaaaaatacaataaaatgaagacATTTAGGTTTCCCACAAATATCCCCTGATGTTGTGAATATTGTAGGTGTTAGCTACACAAGGAGAGATGATAAACTTGCTGAATGCAAGAGTCACAGCTCAccgtgtacagtacagtgtgcaATTGTGCAAAGGCAGCAGCTTACAGATGTCCACCGGCAGGCAGGAGGAGTGCAGAAGTGTCTGAGAAAAGCACACTGAGGATTTGCACACATGCAGCCACTTAATTGAATTCCTGTACAGTTATTATCTCTGTTGTCtcttgtgcttgtgtgtttgttagttttccGGTGGGAAGATCACTTGAGTAATAAGGGTTCTGTCACTCATAGGTGCTGGTGCCTTTGCCAGGGCCGGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108195 True 1740 lncRNA 0.37 1 20612626 20614365

Neighbor

gene id symbol gene type direction distance location
AMCG00021528 vps50 coding upstream 23330 20577693 ~ 20589296 (+)
AMCG00021529 NA coding upstream 49000 20554493 ~ 20563626 (+)
AMCG00021530 vps50 coding upstream 61696 20532168 ~ 20550930 (+)
AMCG00021527 vps50 coding upstream 88300 20506025 ~ 20524326 (+)
AMCG00021526 NA coding upstream 119452 20481211 ~ 20493174 (+)
AMCG00021532 LOC103394147,LOC106952338,LOC107383304,LOC107085850 coding downstream 88739 20703104 ~ 20721264 (+)
AMCG00021535 NA coding downstream 120349 20734714 ~ 20782173 (+)
AMCG00021537 col1a2,LOC107722140,LOC107667770,LOC107591591,LOC107731699 coding downstream 183333 20797698 ~ 20827291 (+)
AMCG00021536 NA coding downstream 215488 20829853 ~ 20842424 (+)
AMCG00021541 ppp1r9a,LOC107722146 coding downstream 260758 20875123 ~ 20886781 (+)
G86668 NA non-coding upstream 65216 20508508 ~ 20547410 (+)
G86665 NA non-coding upstream 111323 20500786 ~ 20501303 (+)
G86633 NA non-coding upstream 149635 20462255 ~ 20462991 (+)
G86625 NA non-coding upstream 202968 20408404 ~ 20409658 (+)
G86573 NA non-coding upstream 313844 20298462 ~ 20298782 (+)
G86687 NA non-coding downstream 6141 20620506 ~ 20620721 (+)
G86695 LOC103362787 non-coding downstream 84849 20699214 ~ 20702457 (+)
G86727 NA non-coding downstream 286662 20901027 ~ 20902855 (+)
G86800 NA non-coding downstream 420737 21035102 ~ 21038425 (+)
G86833 LOC107754811,LOC107672863,LOC107731557 non-coding downstream 557725 21172090 ~ 21175659 (+)
G86601 NA other upstream 211377 20342610 ~ 20401249 (+)
G86616 NA other upstream 232202 20378423 ~ 20380424 (+)
AMCG00021517 gatad1 other upstream 241090 20368153 ~ 20371536 (+)
G86407 NA other upstream 1111384 19499800 ~ 19501242 (+)
AMCG00021485 NA other upstream 1317847 19279765 ~ 19294779 (+)
G86688 NA other downstream 53105 20667470 ~ 20667927 (+)
AMCG00021539 pdk4,LOC107722149 other downstream 294452 20908817 ~ 20912002 (+)
AMCG00021550 NA other downstream 484054 21098419 ~ 21109368 (+)
AMCG00021551 NA other downstream 544259 21158624 ~ 21165500 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other downstream 615487 21229852 ~ 21232853 (+)

Expression


Co-expression Network