G86739 (col1a2,LOC106570460)


Basic Information

Item Value
gene id G86739
gene name col1a2,LOC106570460
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20824022 ~ 20854294 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU108257
TATAGAGTacatgtctttttatttttaggaaacAGTGATAAAAAAAGGGAATTCAGTCATTTCAGTCAAAGGAAACACTGATTCAAATGTGGATAAACAGAGTATTATTTACCAGCATGAGTTTCCTTTCGCTCGAAAGACGTGGAACTCTAGATGACCTGATATACAATTAGATTTTAACCTGGACTATGCTATGCGACTACATCAGAGATTGAGGGTTTGTTATATGTACAAGCTGGTGGAAAGTAACGTGAAGAGATGGGTTTCCTCAAGCAAGAGGAAACAAGAGGGTGGTGTCAGGAGACGGGACAACTGCAAACACACGACAGGTAATGAAGAACCCAGGTGgaatgagaaagaaaagacaTTCGTAAGCCAatggttttagttttcttctcatttctttgcttttcctttccATTCCATCTTGGAATTGATTCTGTTACCTCACAGAGGGGAAGGGGGCTTATCTACATATAATTACATTGGAAAACAATATCTCTTAGTGATGAGTAGTGTTCCTGTGGCACCAGACACATACAGATGCTTCTTTTAAAAAGATTCCCCCAAATCTCTGCCctttgggaaaacaaacaaagaaaaaaggtatGATCATTTGTAACATAAATGCACTTTACTCGTTGAGTGGTGTGTTTCGGAACATCGGACATGCTTTATTTCAGAacttttcacaatttatttaaacatctcacatatacaaaataggtacaataaactttttttaatttttggtgGCTGTTGTCGTAGAGAAAGATTCCTCCGTAAACCCATTCGAATGGACAAAAATGTGCTGAAAGCATGGACACCTGGTTgaagaaaaagggagaaaaaaaaccaaaacaaaacaaaaacaaaacagaggcCTAGGACTGATCCACATGCTTAATACGGGTCATCAGAGAGAACCGCGTGACAATCCATCTTCGGTACAACACAAtgtaatacagtaaaagtgGTTAGGATTTGAGCTGGGTTGTTCAAACGCAGCACCGAGTATAGCACCATTTTCACTGCTTCAAGTATCTAAGCCGTGTAATACTGTTTTTAGCACCTTTTTAACAGGACCGAGATATAAGTTGcctttgttaaaatattaagtaTGTGGATCAGGTTTTAAAACAAGCATGAGGTAGTTCAAACCTTTGGAAGTTGTGGTTTTAAACTTCCTCTTTGGAAGATATACAAAGACCACAAATGGTGCAtactttcattgtttttatttcacttttttattttacaaatgctgACATGTCCCACAACAAGGTGATTCCCACGTCTCTTGGGGGAAAGGGGCGGGGGGAAGGGGCTGTATTAAATTGCATTGCACAAATGCTCCGTTCAGTCCATTGTCTCCTCCGATAGGCCCGAGCTTAAGCAAGTGGATGAGCAGAAGAAATCAGcattcagtataaaaaaaaaacagaaatggcgAGAGagattttttgattttgatttcttttcttttctttctttttgtttaatttatcatGAGTCTACTTATTTGAAACAGACTGGGCCAACGTCCAAACCAATTTCTTGATCAGCTCCACCAATGTCCAAAGGTGCAATATCGAGGATGGGGAGACGAGAGGGTTTCGATGTTTTGTATTCGATGACTGTCTTGCCCCACTGGCCGGTGTGTCCGTGCAGCCGTCCTCCAGCACGCTGAAAGTGAAGCGGCTGTTCCCCTCGGCGCGCAGCTCCACGTCGTTGGAGCCCTGCAGCAGAACGGCCTTCTTCAGGTTGCCGGTCTCGGCGTCCATGTAGGCCACGCTGTTCTTGCAGTGGTACGTGATGTTCTGGGTGGCCTGGTTGGCCAGCAGGCGCATGAAGGCCAGCTGGGTGGCCATCATCTGGGGAGTCAGGCTCTCGTCGTTGTAGGCAAACCTCAGTGCCACCAATGATGGTCTCTCCAAACCAGACGTGCTTCTTGTCCTGAGAGCTTCTGTACCAGTTCTTGCGGGCGAAGCTGGCAGGGTGGGGATAGATGCAGGTATAGCCGGTGGTGAAGTCGCAGTGGACCTTGATGGCATCCATGGTGCAGCCCTGGTTGGGGTCAATCCAGTAATAGCctggaaaggaaattaaattagtGTTAGTCTGTGAACAAGACTCTGTGGTGAACAGGCCAAGCAGAGCCAAATTACTGGACTGGCAAGATTGTGAGGG
>TU108259
TTTTAATTATTGGTGTGTTTCGGAACATCGGACATGCTTTATTTCAGAacttttcacaatttatttaaacatctcacatatacaaaataggtacaataaactttttttaatttttggtgGCTGTTGTCGTAGAGAAAGATTCCTCCGTAAACCCATTCGAATGGACAAAAATGTGCTGAAAGCATGGACACCTGGTTgaagaaaaagggagaaaaaaaaccaaaacaaaacaaaaacaaaacagaggcCTAGGACTGATCCACATGCTTAATACGGGTCATCAGAGAGAACCGCGTGACAATCCATCTTCGGTACAACACAAtgtaatacagtaaaagtgGTTAGGATTTGAGCTGGGTTGTTCAAACGCAGCACCGAGTATAGCACCATTTTCACTGCTTCAAGTATCTAAGCCGTGTAATACTGTTTTTAGCACCTTTTTAACAGGACCGAGATATAAGTTGcctttgttaaaatattaagtaTGTGGATCAGGTTTTAAAACAAGCATGAGGTAGTTCAAACCTTTGGAAGTTGTGGTTTTAAACTTCCTCTTTGGAAGATATACAAAGACCACAAATGGTGCAtactttcattgtttttatttcacttttttattttacaaatgctgACATGTCCCACAACAAGGTGATTCCCACGTCTCTTGGGGGAAAGGGGCGGGGGGAAGGGGCTGTATTAAATTGCATTGCACAAATGCTCCGTTCAGTCCATTGTCTCCTCCGATAGGCCCGAGCTTAAGCAAGTGGATGAGCAGAAGAAATCAGcattcagtataaaaaaaaaacagaaatggcgAGAGagattttttgattttgatttcttttcttttctttctttttgtttaatttatcatGAGTCTACTTATTTGAAACAGACTGGGCCAACGTCCAAACCAATTTCTTGATCAGCTCCACCAATGTCCAAAGGTGCAATATCGAGGATGGGGAGACGAGAGGGTTTCGATGTTTTGTATTCGATGACTGTCTTGCCCCACTGGCCGGTGTGTCTCTG

Function

symbol description
col1a2 Predicted to be an extracellular matrix structural constituent. Acts upstream of or within response to mechanical stimulus and skeletal system development. Predicted to be located in extracellular region. Predicted to be part of collagen type I trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including cranium; integument; myoseptum; osteoblast; and pectoral fin. Used to study Ehlers-Danlos syndrome and osteogenesis imperfecta. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome (multiple); heart valve disease; intracranial aneurysm; osteogenesis imperfecta (multiple); and osteoporosis. Orthologous to human COL1A2 (collagen type I alpha 2 chain).

NR:

description
PREDICTED: HMG box-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108257 True 2190 lncRNA 0.43 3 20824022 20827297
TU108259 False 1032 lncRNA 0.39 2 20825630 20854294

Neighbor

gene id symbol gene type direction distance location
AMCG00021533 NA coding downstream 130798 20689347 ~ 20693224 (-)
AMCG00021531 calcr coding downstream 185066 20618070 ~ 20638956 (-)
AMCG00021525 cdk6,LOC107667775,LOC107558583,LOC107722162,LOC107567973 coding downstream 363744 20444543 ~ 20460278 (-)
AMCG00021523 cdk6,LOC106588946,LOC107567973,LOC107667775,LOC107558583 coding downstream 388971 20414530 ~ 20435051 (-)
AMCG00021524 fam133b coding downstream 411550 20402783 ~ 20412472 (-)
AMCG00021545 NA coding upstream 44777 20899071 ~ 20902765 (-)
AMCG00021546 NA coding upstream 62389 20916683 ~ 20926715 (-)
AMCG00021549 NA coding upstream 129306 20983600 ~ 21020401 (-)
AMCG00021548 NA coding upstream 180569 21034863 ~ 21038425 (-)
AMCG00021552 dlx5,LOC106570474 coding upstream 232581 21086875 ~ 21094522 (-)
G86738 NA non-coding downstream 58 20823000 ~ 20823964 (-)
G86736 NA non-coding downstream 1419 20821632 ~ 20822603 (-)
G86689 NA non-coding downstream 209914 20612663 ~ 20614108 (-)
G86648 NA non-coding downstream 429816 20393044 ~ 20394206 (-)
G86639 NA non-coding downstream 467543 20355070 ~ 20356479 (-)
G86848 NA non-coding upstream 321412 21175706 ~ 21184318 (-)
G86849 NA non-coding upstream 332474 21186768 ~ 21188838 (-)
G86850 NA non-coding upstream 335545 21189839 ~ 21190932 (-)
G86881 NA non-coding upstream 437079 21291373 ~ 21293903 (-)
G86893 NA non-coding upstream 661738 21516032 ~ 21516234 (-)
AMCG00021534 bet1,LOC107669829,LOC107722155 other downstream 99142 20721884 ~ 20724880 (-)
G86649 NA other downstream 426239 20395612 ~ 20397783 (-)
G86640 NA other downstream 463767 20358301 ~ 20360255 (-)
G86600 NA other downstream 488718 20329422 ~ 20335304 (-)
AMCG00021514 NA other downstream 539043 20281152 ~ 20284979 (-)
G86808 NA other upstream 209564 21063858 ~ 21083570 (-)
AMCG00021569 NA other upstream 812108 21666402 ~ 21671315 (-)
AMCG00021619 NA other upstream 2300893 23155187 ~ 23160991 (-)
AMCG00021630 NA other upstream 2475031 23329325 ~ 23332968 (-)
G87263 NA other upstream 2483957 23338251 ~ 23338484 (-)

Expression


Co-expression Network