G86800


Basic Information

Item Value
gene id G86800
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21035102 ~ 21038425 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU108340
ttttcccatttttaattcttaattttttatttttttttacaaaaaaaagaaaacaaaactgcagtatTGGTCAACAACATGGATGCTTAATATCTTCGGTCTTCAACGTGTGGCAACAGGACACCATTCCCAATCCTGTGAAAGTCTTATATATAAGTTAAGTCTCAGTGGGCAGCTGAAGACTACGAGGTCTCCATTTTGTAGCCGTGTTTTTCTAGTTCAGCTCTGAGCTGGTTCGAGAAGTCGTCCTCTACGTTGTCATCGTCCCAGTTGTCCTCCCACACGTGTGCGTCTTCGTCTTCGTCCAGGCCGGTCCAGTCTTCCGCTGGAAACTCCTCAAACTCGTCGTCCTCCTCTAGTAATCCCAAATCCACCGTCTGCTTCTTCTCGGACATGATTTCTGGCTTCTTTACCTCAGACATCCGAAGCGCTGCTGCTGTTCAGGTCTAGGGGCTGACGGGATACTGGAGGTTATGAGGCGGTCCTCCCGCGCAAGCGCAGATCCGACGGTGACTTGCTCTGGTGGAACTGGG

Function

GO:

id name namespace
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005689 U12-type spliceosomal complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108340 True 533 lncRNA 0.48 3 21035102 21038425

Neighbor

gene id symbol gene type direction distance location
AMCG00021543 dync1i1 coding upstream 54477 20957229 ~ 20980625 (+)
AMCG00021544 dync1i1,LOC102799504 coding upstream 94894 20929804 ~ 20940208 (+)
AMCG00021542 NA coding upstream 127316 20904388 ~ 20907786 (+)
AMCG00021540 NA coding upstream 136654 20890890 ~ 20898448 (+)
AMCG00021541 ppp1r9a,LOC107722146 coding upstream 148321 20875123 ~ 20886781 (+)
AMCG00021547 dlx6,LOC107670195,LOC107665661 coding downstream 39520 21077945 ~ 21080685 (+)
AMCG00021555 NA coding downstream 142377 21180802 ~ 21192757 (+)
AMCG00021556 NA coding downstream 154537 21192962 ~ 21194602 (+)
AMCG00021563 NA coding downstream 230778 21269203 ~ 21291092 (+)
AMCG00021565 LOC108410782,LOC107670023,LOC107698976,LOC107722163,LOC107555956 coding downstream 321743 21360168 ~ 21361602 (+)
G86727 NA non-coding upstream 132247 20901027 ~ 20902855 (+)
G86695 LOC103362787 non-coding upstream 332645 20699214 ~ 20702457 (+)
G86687 NA non-coding upstream 414381 20620506 ~ 20620721 (+)
G86685 NA non-coding upstream 420737 20612626 ~ 20614365 (+)
G86668 NA non-coding upstream 487692 20508508 ~ 20547410 (+)
G86833 LOC107754811,LOC107672863,LOC107731557 non-coding downstream 133665 21172090 ~ 21175659 (+)
G86859 NA non-coding downstream 198676 21237101 ~ 21238163 (+)
G86884 NA non-coding downstream 257106 21295531 ~ 21297780 (+)
G86892 NA non-coding downstream 477608 21516033 ~ 21516243 (+)
G86905 NA non-coding downstream 599851 21638276 ~ 21638516 (+)
AMCG00021539 pdk4,LOC107722149 other upstream 123100 20908817 ~ 20912002 (+)
G86688 NA other upstream 367175 20667470 ~ 20667927 (+)
G86601 NA other upstream 633853 20342610 ~ 20401249 (+)
G86616 NA other upstream 654678 20378423 ~ 20380424 (+)
AMCG00021517 gatad1 other upstream 663566 20368153 ~ 20371536 (+)
AMCG00021550 NA other downstream 59994 21098419 ~ 21109368 (+)
AMCG00021551 NA other downstream 120199 21158624 ~ 21165500 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other downstream 191427 21229852 ~ 21232853 (+)
G86861 mios,LOC106605261,LOC106582151 other downstream 196645 21235070 ~ 21236080 (+)
AMCG00021560 NA other downstream 203241 21241666 ~ 21257189 (+)

Expression


Co-expression Network