G86833 (LOC107754811,LOC107672863,LOC107731557)


Basic Information

Item Value
gene id G86833
gene name LOC107754811,LOC107672863,LOC107731557
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21172090 ~ 21175659 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU108380
AAACCTCTCTCATACCAATATGTGGTTGTAAATCTCTCCATTGTAACAAAGCCACAAGTGAGGAAAACTCTTTATGCGCAGCGGCTGCATCCCGTACAGAGGGTCCACGATGGCCAGCCGGTGGAACCCGAAGCAGCAGTTGATGAAACCGTTGACGTTCTCGAAGCGGAAGGCGTCGGGGCCCCTGTGCGCGATCTGCATGGCCCCAGTGCACTGGACTGACAGGCACTCATCGCTGCCAAACAATGCCCATATCCCACACATGGTCTCACTTATAAACGTCTGAGAGTCTCTTTCCGATTCAATGGAGCGGAGTCGATAACTAGTCGGGTTCAGGGTGAACTCCAGTCCTTCTCTACCGCCGCTGCTGGTCCCTCTGCGCGCAAAACAGCCGGTGCGCCCATGCGGTCCGAGTCAGGCACATGCGCAGCTGCGGTTAAAGGGATGGGACGCTGCCTTAAAGGGCAGGAGCGCCGGGTCCTCAATACACAGCGCACCGATCCGGCTCCAGTCCGGCTCTAGTCCGGCTCCAGTCCGCGTCTTTAGCCCCGCCGGGCCGGCAACACGAAATTAAACACTGAAGTTACATCAGCTACAGTTCATGATTTCATCTGAGCTTCCTGTGTCATCACTCCGAAACATTGCATTACTTATAGACATTTGCAACAATTCATGATTAAACTTGAAGACGTTGATTGATCAAACCCcgtttatttattgaatacagTGGGcacccttgtttttttttcaatacatgaCTAATTAAAACACCACATCG

Function

NR:

description
PREDICTED: asparagine synthetase [glutamine-hydrolyzing]-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108380 True 778 lncRNA 0.52 2 21172090 21175659

Neighbor

gene id symbol gene type direction distance location
AMCG00021547 dlx6,LOC107670195,LOC107665661 coding upstream 91405 21077945 ~ 21080685 (+)
AMCG00021543 dync1i1 coding upstream 191465 20957229 ~ 20980625 (+)
AMCG00021544 dync1i1,LOC102799504 coding upstream 231882 20929804 ~ 20940208 (+)
AMCG00021542 NA coding upstream 264304 20904388 ~ 20907786 (+)
AMCG00021540 NA coding upstream 273642 20890890 ~ 20898448 (+)
AMCG00021555 NA coding downstream 5143 21180802 ~ 21192757 (+)
AMCG00021556 NA coding downstream 17303 21192962 ~ 21194602 (+)
AMCG00021563 NA coding downstream 93544 21269203 ~ 21291092 (+)
AMCG00021565 LOC108410782,LOC107670023,LOC107698976,LOC107722163,LOC107555956 coding downstream 184509 21360168 ~ 21361602 (+)
AMCG00021566 phf14,LOC107722156,LOC107698992 coding downstream 398391 21574050 ~ 21605063 (+)
G86800 NA non-coding upstream 133665 21035102 ~ 21038425 (+)
G86727 NA non-coding upstream 269235 20901027 ~ 20902855 (+)
G86695 LOC103362787 non-coding upstream 469633 20699214 ~ 20702457 (+)
G86687 NA non-coding upstream 551369 20620506 ~ 20620721 (+)
G86685 NA non-coding upstream 557725 20612626 ~ 20614365 (+)
G86859 NA non-coding downstream 61442 21237101 ~ 21238163 (+)
G86884 NA non-coding downstream 119872 21295531 ~ 21297780 (+)
G86892 NA non-coding downstream 340374 21516033 ~ 21516243 (+)
G86905 NA non-coding downstream 462617 21638276 ~ 21638516 (+)
G87030 agr2 non-coding downstream 1127907 22303566 ~ 22306888 (+)
AMCG00021551 NA other upstream 6590 21158624 ~ 21165500 (+)
AMCG00021550 NA other upstream 62722 21098419 ~ 21109368 (+)
AMCG00021539 pdk4,LOC107722149 other upstream 260088 20908817 ~ 20912002 (+)
G86688 NA other upstream 504163 20667470 ~ 20667927 (+)
G86601 NA other upstream 770841 20342610 ~ 20401249 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other downstream 54193 21229852 ~ 21232853 (+)
G86861 mios,LOC106605261,LOC106582151 other downstream 59411 21235070 ~ 21236080 (+)
AMCG00021560 NA other downstream 66007 21241666 ~ 21257189 (+)
AMCG00021591 NA other downstream 1095212 22270871 ~ 22291141 (+)
AMCG00021602 NA other downstream 1521505 22697164 ~ 22711144 (+)

Expression


Co-expression Network