G86848


Basic Information

Item Value
gene id G86848
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21175706 ~ 21184318 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU108398
cataagtattaaaaatttgaattgttttttttatgtaatgtaaaatactacaaacaataaaacagtccTTGTCCATAAGCAGTTTTTAACTCATGAACTTTTGAATTAGACTTAAaaacatactactactacatacTGTTAATCAGTCTGTGTAACAGGGCCAAGTGATTGATTGAACAGTGCTGGATcctattaattacattattccaATCAACTGatctaaaacagcaattaacattttttgtttattgtgaatCCTGGGTTTATATTGAAGAGTTTGCATTGGTTTTTATAGTTGGAATTGCTGTGTTGGAATTGTGGTTATCTATAttggtgtgtttattgtatGGTCTATTTGATATTCACATTGTGGCTCTTTTTCACTTATAttggtgtttattttagtatttctaTGAAGGTTATTTTCCCTTTGATCATAACAATTGGTTCAATGTGTGAGGACTGATTTGACTGGGAAATTAACTGAACTATTTAATGGATATTGACTTTTTATGGATTGTTTAGTGatactttattgtattgtattgcctaaattgcacattgtgtacccaacttttatttatttgtttattaaaaagaccTTGATACATATTTCCTCCTGGCATTTCACTCTCCCCTTTTATATAACTACCTCCTGTTTCCCGGTTATTTGACCGGGCCGTCTCTGTAGTACATGCTACTCTGTCAAATCCAGATAGAGCACAGCCTTACTAGGACCGGTTTAGTTATTTACAATTACAGATACAGCTCTTTTAATTCATGTCGGGTAGCGCGAGTCGAAGATCAATCAAAGATCAAACGTCAATCAAACTTCACCGCCGTCATTCAAATTTGTTATTAAGATTGTTTTCCCAATAAGGGATCCAAGTGTGCTAGTGAAATATTTGTACCTTGGGACACATTTCAGAGGCCACTCAAGGCACTGATGTATTTACCATGAAGCTGCATAATCTTAATTTATATTGATAGTTCATATTGAATGTTTGAATGACATAACTTAATCTGAAACCATACCAATCAAATGGACACAAGGATCAGGACAGGTCTGGCGGTGACAGTGCAGCTCCTGTCCCGCCAGTGTTGTGGAGTGCTGTGTCGCAGTGGGGAAAGTCTGACACAATGTGGAGAAGACACGCATTGGCACACTGGGCTGGTTGCTGCTGCTGAAACGGCGGATAGTTTGAGTCACAAACCCCGAGGCTGGGAGCGCTTTCCCCGGCAGGCTGCTGCACCTCCAGCGCCACTGCGGAGACCCAGAGTCCGGACCAGCTCTCCGCTTTGTTTCAGTCTGTCTTCTACAGGATGAAGACCGGAGTCGCGTCTGCTTTGGAGAATCAAGGTCCTGTCCGCGGTGTGTTGGTCCGGCTGCGCGTCACTGATCCGAGCAGCTGCACCAGACTCAGCCACGATCAACGCGAAGAGAAAAGTGCTATTGTGTTCATTGGAAAGCTTGAAGTGGGGGGTTTGGTAGCTTTTATTGCATCTTATGATTTTATTGGTGTGTTCTATAATGTGCATCTTATGGTTTGTATTGGAATCCCTATCCACCACCATTAAAGCCATTTCCAGTGCTCTTTAGCACCCCTGCCTGTAGGGGGTAGTGGTGGTACTGCAGCCACAATCTGTAGGCAGTATTGGCTATCGTGGATCTGAAAACCGACTAAAAGCATAGAGCACTAGAGGCGCCTAGAAAAGTGGGTTCAACTCTTACAGTGACTAGCCTGATTGATAGGGTGCTTCAGAGCCTTAATGTGTACCgctatattttactttaataaattttaatttgcaatccCTTGTCCTTTTATTCCCTGGTGTTTTAATAAGCCTGTATCACCGTAACTCCAGCGCCGGATAAAAAGAGTGTGCCCTATTTTCCATTTGGCGCCACATACACAGCACTCCTGCACCTGGCCTGCCGGAGTCATACACAAAGCTGAAACTCATACATGGGTTATTATTACGCTATTGCTGTAACAATGGGGCGAATACGTTTGGCATCTAGACCTGTCCCTTGTCAAAACACAGCCTCACTCCTCTCATGCAGCTCAGCACAAAGCGCTGGACACGCCTGTCTTTCGGTTTCCTGCGATCAGATCAAGATGAAGCTTAAACTCGTACCGATGAAATAAGAGTAAAGACGTTTCATTGGCTATTAAATTAAGTGCCAGAAAAAACACTGATACCTGACCCTGATTTCGAATGATCCCTGATATTAAAATCGAGGGACACCTGATATTACATTGGAGTGATGCATGAGAAATGACATAAAATATGCATGATGCTTGATACCACCCAGACGCACGTTTTATCTCCCGACTTATAATCATCAACGAAGAAGGCGATTGGCCGCATAAATAATTGACAAGCTTTTTctgcaaagtgattggctgcataatcAAAAGACACCTGCAAGATAATACTGGCTGACCCACTAATCCAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
ko00512 Mucin type O-glycan biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU108398 True 2464 lncRNA 0.41 2 21175706 21184318

Neighbor

gene id symbol gene type direction distance location
AMCG00021554 asns,LOC107568288 coding downstream 356 21166581 ~ 21175350 (-)
AMCG00021553 NA coding downstream 35023 21109754 ~ 21140683 (-)
AMCG00021552 dlx5,LOC106570474 coding downstream 81184 21086875 ~ 21094522 (-)
AMCG00021548 NA coding downstream 137281 21034863 ~ 21038425 (-)
AMCG00021549 NA coding downstream 155305 20983600 ~ 21020401 (-)
AMCG00021557 NA coding upstream 11277 21195595 ~ 21205945 (-)
AMCG00021562 NA coding upstream 23378 21207696 ~ 21227807 (-)
AMCG00021559 LOC105891776 coding upstream 48613 21232931 ~ 21237464 (-)
AMCG00021558 NA coding upstream 54756 21239074 ~ 21241091 (-)
AMCG00021564 ica1,LOC107592479 coding upstream 111279 21295597 ~ 21310899 (-)
G86739 col1a2,LOC106570460 non-coding downstream 321412 20824022 ~ 20854294 (-)
G86740 NA non-coding downstream 344784 20828259 ~ 20830922 (-)
G86738 NA non-coding downstream 351742 20823000 ~ 20823964 (-)
G86736 NA non-coding downstream 353103 20821632 ~ 20822603 (-)
G86689 NA non-coding downstream 561598 20612663 ~ 20614108 (-)
G86849 NA non-coding upstream 2450 21186768 ~ 21188838 (-)
G86850 NA non-coding upstream 5521 21189839 ~ 21190932 (-)
G86881 NA non-coding upstream 107055 21291373 ~ 21293903 (-)
G86893 NA non-coding upstream 331714 21516032 ~ 21516234 (-)
G86925 NA non-coding upstream 600558 21784876 ~ 21785134 (-)
G86808 NA other downstream 92136 21063858 ~ 21083570 (-)
AMCG00021534 bet1,LOC107669829,LOC107722155 other downstream 450826 20721884 ~ 20724880 (-)
G86649 NA other downstream 777923 20395612 ~ 20397783 (-)
G86640 NA other downstream 815451 20358301 ~ 20360255 (-)
G86600 NA other downstream 840402 20329422 ~ 20335304 (-)
AMCG00021569 NA other upstream 482084 21666402 ~ 21671315 (-)
AMCG00021619 NA other upstream 1970869 23155187 ~ 23160991 (-)
AMCG00021630 NA other upstream 2145007 23329325 ~ 23332968 (-)
G87263 NA other upstream 2153933 23338251 ~ 23338484 (-)
AMCG00021634 NA other upstream 2310707 23495025 ~ 23498761 (-)

Expression


Co-expression Network