G86881


Basic Information

Item Value
gene id G86881
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21291373 ~ 21293903 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU108442
TTGACTGAATTAACAGTGGGTTTGAAAAACGTTTCTAATagagttttgttttcctcagagcacatttaattgtaatattaattgGCAGCATGGTCTGTCGACCTTCCTTTTAATGAAATTTAATCAAAGCCTTTTCAGATTCCATCTCCCTAATTATTcacttatacattgtttttaaatcctgaaTTCAAGAGATACAAACCTTCCACACAGTCTGACAGCAACAGTggtttaaaaatagtaaatcaAATCTCCAGTTGCAAAGATCAATGCACACACATTTAAGTAGTAGAAAAGTACGTGTGTTAATCAGCCTATGATTTgtcctgttgtgtgtgtgtgtgtgtagcctatagacacatacacacaaatcaaaTAGAAAGTGGAAAGGTGTGATATAAACTCATCTACCCACTGTGGTTTTGGTTCTGCgaataactttatttaaataagacacAAGAGCGCtatactgaaaaatacaaaacaaaagccacacACGGCATTAATTAAACCGGCGCTGTGTGGCAACTCATCAATACTGTTCAGCACAGTGGCTTGATATTACAGTGGGACTATATACAGACTCCAGACAAGCTTTTAAACATCGGGTTTTAAATGTCTACACCTTGATGTAGGAGACATCGTAAAATAGCTTCGGTTGATGGAGGACAAACTATGAGTTTTGTTGATCTGACATGATATTAATCTCGCCACAGTGACTTTATCGTCACCAAGCCACTCGTTTTGGAGGTCTCTGGCTGGGCTGCAGAAGATACCAAATTGTGCTGAAGGGCCCAATATATTCGTAATTgtataccccccacccctccacacacacacacccacctctctcaacaaccaccaccaaaataaaaataaagagtaGTTTGCTTTATTACACCCTTTATGAGACTGAAGatgaatgaaacacaaacagggaCTGAAACGCTTCAAGTTTTGGAACAATATGCAGCGACACCATATTGCTTTTCACTTGTGTGAGTTCATTTGATTTGCATATCATAACTTTAgaataaaacttttaaaacgTGCATATGGTTCACAGTCTGTGCGCTAAAATCAAACTGGACGTGAAGTAGTGGCCAATAGACACTTGTAGCAAAGTTGCTCTATATttagtgaaaagaaaatgtaactgtGTGAGCAAGACAAACTAAATCCATTGCCATTCATCCAAGGAGACATAAGCAAGGAAAGGGTGTAATAAAACCTCTATTTAGTTCCTGCATGTTGATATAAATCCATTATTATCAATTTAGAGTAACATTCGGTTACTTTTAAAACTCAGAACAACgttatttttattgcacacaaactACTTGaccaaagaaagagaaaacgtTAATGGACAACAGAGCATCactcgagagagagagagaaaacaggaaaGTGCTCGCTAAAATTGCATCAGCCTGATCCGATTTAAAGCCATTTCTAACCTGGTACGACTGAAGATTTCATAAACTGCCTACCGAGATCAAAACCCAGGACTGTCAGTTATTCAACGTCTTGTGCAGGGAGAGCGTTGGGGCTTATGAAGCATGTCAGCACTGTGTCGAGTTCCGAAGCCGTCGGTTTAAAGTCCGTCGTGACGGGGAGATCTGAGCAAGGACACCGAGTCTCACGGCCCGGCAACCCAATTAGCGAACTGATATATGAACCATTGCAGGCGGAGAAACAGGCGTGAAGACCTGCTGAGAAACAagtctttttaaagaaatttaGCATTTAATTCCAGGGGCCGTCGTCGCATGCGGGCGAGGACTGAAATTACGCTGAGCGCCCAAACCTCTCCGTTTCCGTCGAGCCGGGTCATGTCGAGCTACACCGGACACACGTGGAATGTTTTAATGCACAGCCGAGTACCGCACACTTATTCACAACGTCTTAACAGTCATAGAATGAGCAACACCTGAATATCTCCGAACGCCACACTTCTCTTCTTCTTGTAGCTGTGATGTTCGGACAGCGCGGTCCTGCTGGTCAGCGCCATGCCGGCCTCCAGTCCGGGCagcgccccccccacacacagagagCACTTATTCCAGGAGAGCAGAGTGGCAGGAGGAGACGGGTCAGGGCGAGAGACGAGGAAaggcgagagcgagagagatagagagagcgGTGCTTATTGTGGACTCCCTCCCCGGTGTCCGGAGCCACGGACGGGTTCGATACATTCCAGATTACCTGAGTTTAGACTTCGTGAGAAGTACCTGAAGCGGCCAGTCTGAGGGCAGTCTGTGTGAAATGGTtgtggcctttttttttcttttttgcattgTATGTCTTGAAGTTTAGAAACATAACCTGGATTGAGTGTAAACATAATCCTGAAGagtacagcatttttttttctttacatacatGACACAGCAATACACAATTTCAATTAAGGTTTTTGTTTGCCATTGGATATAGAGCTTATTCATACTGTGGATGTGGAGACGGGACACAGGACAGAGAACTCGAATGATCCGACCCACGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108442 True 2509 lncRNA 0.43 2 21291373 21293903

Neighbor

gene id symbol gene type direction distance location
AMCG00021558 NA coding downstream 50282 21239074 ~ 21241091 (-)
AMCG00021559 LOC105891776 coding downstream 53909 21232931 ~ 21237464 (-)
AMCG00021562 NA coding downstream 63566 21207696 ~ 21227807 (-)
AMCG00021557 NA coding downstream 85428 21195595 ~ 21205945 (-)
AMCG00021554 asns,LOC107568288 coding downstream 116023 21166581 ~ 21175350 (-)
AMCG00021564 ica1,LOC107592479 coding upstream 1694 21295597 ~ 21310899 (-)
AMCG00021568 NA coding upstream 380388 21674291 ~ 21761907 (-)
AMCG00021572 NA coding upstream 542120 21836023 ~ 21855452 (-)
AMCG00021577 NA coding upstream 677386 21971289 ~ 21992069 (-)
AMCG00021576 dgkb coding upstream 707776 22001679 ~ 22012233 (-)
G86850 NA non-coding downstream 100441 21189839 ~ 21190932 (-)
G86849 NA non-coding downstream 102535 21186768 ~ 21188838 (-)
G86848 NA non-coding downstream 107055 21175706 ~ 21184318 (-)
G86739 col1a2,LOC106570460 non-coding downstream 437079 20824022 ~ 20854294 (-)
G86740 NA non-coding downstream 460451 20828259 ~ 20830922 (-)
G86893 NA non-coding upstream 222129 21516032 ~ 21516234 (-)
G86925 NA non-coding upstream 490973 21784876 ~ 21785134 (-)
G86997 NA non-coding upstream 836903 22130806 ~ 22188140 (-)
G87092 NA non-coding upstream 1334696 22628599 ~ 22628891 (-)
G87116 NA non-coding upstream 1396705 22690608 ~ 22690889 (-)
G86808 NA other downstream 207803 21063858 ~ 21083570 (-)
AMCG00021534 bet1,LOC107669829,LOC107722155 other downstream 566493 20721884 ~ 20724880 (-)
G86649 NA other downstream 893590 20395612 ~ 20397783 (-)
G86640 NA other downstream 931118 20358301 ~ 20360255 (-)
G86600 NA other downstream 956069 20329422 ~ 20335304 (-)
AMCG00021569 NA other upstream 372499 21666402 ~ 21671315 (-)
AMCG00021619 NA other upstream 1861284 23155187 ~ 23160991 (-)
AMCG00021630 NA other upstream 2035422 23329325 ~ 23332968 (-)
G87263 NA other upstream 2044348 23338251 ~ 23338484 (-)
AMCG00021634 NA other upstream 2201122 23495025 ~ 23498761 (-)

Expression


Co-expression Network