G87030 (agr2)


Basic Information

Item Value
gene id G87030
gene name agr2
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 22303566 ~ 22306888 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU108617
gtttgctCAACATTTCCAAGCACGTTTCCCCAGCTTTATTATAAATTCACACAGGCATTGTTGAACACCgctatgtttattaaaaagatgAGAAAGTCGTTACATTCAGCATTCCAAACAGAGGTGAACTGAGAATAAGAGGATCCATGAAAGCAGAACATTTTCCATTGCAGttgaacacacaaacacgcacacacacacacacacacaagtccaGTGCTTCACTTTACAACAGAGTAGTTTTCCAGGATGTGTCTGGTTGACTCTAAGCTCCTGGCTCGGCGAGAACATCCTGGAACCTCCCAGAGGTCAGACGTCTTTCTTCGCTTTTTACAGTTCGGTCTTCAGCAGCTTCTTGGCTTTAATCATGTTGCTATGCAACAGGTCGATGTCTGAGGGCTCGTAAGCGTACAGGCGGTTTGCATATCTCCCAGTGATGTCAGCCCTGACTGTCAGAGAGGGATCTACAAAAATAACTCTGGGCACATACTGACCATCGGGAGACAGATGCTTATCTGTAGTTTCATACACGAGGTTAATCAGGATGAAGTCCTCATCGGCCAACTTCTGAATTTCCTTGTTGgtagaaaatgcttttttcagagCAAGACTGTGTGGACAATCTTCCAGGTGATGGATGACCATCAGGGGTTTGTTGTTTGATTTGGATCTGAACAAAGCTTCCTCGTAAGTCTGGACCCAAGTTAGCTCATCACCCCATCCTCTGGACAGAGTCTGTGGAAGTTTCTTGGGTTTTTGACTCACAGCTTTATCAGGTTTTCCAAAACATGAGGAGATGGCCACCAATACCACAACCACAGAACACAAGCCTTTTGCCATGATTATAGTTTACTGTCCTCCTGGC

Function

symbol description
agr2 Predicted to enable identical protein binding activity. Acts upstream of or within intestinal epithelial cell differentiation. Predicted to be located in extracellular region. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including digestive system; hatching gland; integument; olfactory system; and vestibuloauditory system. Orthologous to several human genes including AGR2 (anterior gradient 2, protein disulphide isomerase family member).

NR:

description
PREDICTED: potassium voltage-gated channel subfamily A member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108617 True 865 lncRNA 0.45 8 22303566 22306888

Neighbor

gene id symbol gene type direction distance location
AMCG00021590 tspan13,LOC105012392,LOC108433833,LOC106588709,LOC107562755 coding upstream 2398 22293764 ~ 22301168 (+)
AMCG00021584 bzw2,LOC107702135 coding upstream 38376 22248251 ~ 22265190 (+)
AMCG00021585 NA coding upstream 66190 22235978 ~ 22237376 (+)
AMCG00021575 arl4a,LOC103358889,LOC104928894 coding upstream 401513 21899896 ~ 21902053 (+)
AMCG00021574 NA coding upstream 406537 21878156 ~ 21897029 (+)
AMCG00021593 NA coding downstream 73362 22380250 ~ 22390591 (+)
AMCG00021595 NA coding downstream 197257 22504145 ~ 22526873 (+)
AMCG00021596 NA coding downstream 234034 22540922 ~ 22575847 (+)
AMCG00021604 NA coding downstream 526147 22833035 ~ 22839518 (+)
AMCG00021605 NA coding downstream 535904 22842792 ~ 22900445 (+)
G86905 NA non-coding upstream 665050 21638276 ~ 21638516 (+)
G86892 NA non-coding upstream 787323 21516033 ~ 21516243 (+)
G86884 NA non-coding upstream 1005786 21295531 ~ 21297780 (+)
G86859 NA non-coding upstream 1065403 21237101 ~ 21238163 (+)
G86833 LOC107754811,LOC107672863,LOC107731557 non-coding upstream 1127907 21172090 ~ 21175659 (+)
G87086 twist1 non-coding downstream 280326 22587214 ~ 22588925 (+)
G87091 NA non-coding downstream 321732 22628620 ~ 22628886 (+)
G87168 NA non-coding downstream 700506 23007394 ~ 23014831 (+)
G87215 NA non-coding downstream 838116 23145004 ~ 23191753 (+)
G87233 NA non-coding downstream 890733 23197621 ~ 23197869 (+)
AMCG00021591 NA other upstream 12425 22270871 ~ 22291141 (+)
AMCG00021560 NA other upstream 1046377 21241666 ~ 21257189 (+)
G86861 mios,LOC106605261,LOC106582151 other upstream 1067486 21235070 ~ 21236080 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other upstream 1070713 21229852 ~ 21232853 (+)
AMCG00021551 NA other upstream 1138066 21158624 ~ 21165500 (+)
AMCG00021602 NA other downstream 390276 22697164 ~ 22711144 (+)
AMCG00021656 NA other downstream 1867515 24174403 ~ 24178092 (+)
AMCG00021657 NA other downstream 1876320 24183208 ~ 24198827 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 2602996 24909884 ~ 24949100 (+)
AMCG00021682 NA other downstream 2969888 25276776 ~ 25372339 (+)

Expression


Co-expression Network