G87287 (cbx3,LOC108425284,LOC105023664)


Basic Information

Item Value
gene id G87287
gene name cbx3,LOC108425284,LOC105023664
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23482972 ~ 23488212 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU108957
gctTAAGCTACAAACCTTTATTGAAAAAGTATTTACAGGAGTTAAAACCACACATTCTAtactgttaaacaaaacaatcaaaaagatCAAAAGATCAAACCTGGCACTTTTAGGAATCTGTGCCTCTCAACAGGATATTTAAACCTCACAAAACAAGCATAACggacaaaagaaaaagatcGTTTTCAGTAAAGGGAAAGGTTTTAAGCAAAGGGGCTAGAGTGAACATCCCTGCATTATTTACATCTGGGATTTCTTGAAACTCCACTAAATCTAATTTAAAGATCACTTGAAAGgaaaatactgtacatcaatGGAAAATTACACTGGTAAAATGAGCACAAtgcactttaataaaatacaaaacagagcagGGGTATTCTCCACcctagtcctggaggaccccctaacCTACAGATTTGTATCCCAACTGAGCtctccattacttaattgaacccttaagtaatttgcatttaaattgtgtaactgataagtTGGTTCCTTGGAAAGCTCCTTATACAACTTATACTTAAAACCCCTGTTTACAATGAAAAGGCTCCCATTTAGAAAATGGTAAGTTACaataaaggttcaattaagtaattgagagctccactggaacacaaaccaaaccctgTGCCTGCAGGCCTGTAATCCTGCCAGGTCTTGAGGGCATGGCTCACAGATGCCCTCACAGCCTGCCAGGATTACAGGCCTCCAGGCACAGGGTTGCACACTAACACCAATGTTGGCCTCCAGGACCAGAATTCCCCATCCATATCTGCAGAAACTCATTAGTAGGGTCAGGCAAGATGCAGGTTGGCCCTCTATGGTCCAGACACTTGTTGAAAGTTTAACAGCAGAAGAGTCAGGTGGAGTGCGTGTATGTGGGGGAGAGAGGATGAATAGGATAATCTGAAGGGGGCATCGTAAATTTCCAACTGCTGTGGAGAGGGGGATAGgagcaagagaccactgcacacTTTAAAAGCTCAACTAAACGCACAACTTCGTAGAAAACGTTTCTAAAAAAAGTTCTAGGTTTTATTgatcaatttattaaaatgtgataaCAGGACATCTtggatttaaatgcaaaatacaaactgGTAGCAATGAGACCTcatcacatgtatttattccatCTTCAATTAAAGTGGCTTTTAAACAGCAAGAGATTCATTTCTCCCCCCCAACCTCCCGTCCCACTCCTCTACCAaattcagaaaacagaaaaaaaaaaattcaggaCATGCGAGAGCAGACGACTCCGGAAACTACCCACTGGCTCACAGCTAAGcatctaaaaacaaatgtgcccTACATGTACACTaacattctaaaatatatacaaatgcaaCCATCAGACAGCACTGCTCTGCACTAGGATGCAACTGGTATTCCCTGCAAAAtaaggaggaaaaaacaaaaacaaaataaaagttgccACTGAAGTGGGCGTTACTGCTGTTCGTCCTCTGGACACGAATGCCAAGTCAGTCTCTCTTCGTAGAAAGCAATTACGACCTGAGGACATTTCACGTTGGCTTCTTTGGCTGGTACTAAGTCCGCTTCATCCGATTCTTTCCACTTCATTAAGAACATGAGTTCCCCACTGCTGTCCGTCGCTCCGATGATTCGCTCTGGATCAAGGTTACGAGCAAAACCCCGCGGTTTGTCACTTGCCTCCTTTTTCTTCTTGGCTTTGCTTTCTTCCGACTCGCTTTCGGAAGCGGACTTCCTCTTGTTGGAATCTGGTTTTTCGACTGTGGTTTTCTGTGAGGCCAGGAATGCGTCGATTAATTCTGGGCAGTCAAGGTTCTCCTCCGGCTCCCAGGTGTTGTCGGCATCAGTAAAGCCCTTCCACTTCAGATAATATTCAACTTTGCCATTCACAACCCGACGATCAATCACTTTCTCCACAACAAATTCTTCAGGTTCAACCTCCTCTGCCTTCTTGCCTTTTCCATTTTGCTTCTTTCCCATTGTGCCCGCTATTTGGCTCGGATTGCTGTTGGGTTTTCCTGGCATCTTTGATTTTGCACGCAATCCTCTGCAGGTCACgtaatCTTTGAATCTCCTAAACAGTGCGAGGACGACAACAACAATGCTCTCTTCCCGTCTTTGCTGTATCTACTGGCGCCAAAACCCCCGACCTCTTATAGCGCTACCAGTCCACCGCTACCCCCGCGCAGCGCTTTTAACCTACTCTTCACGGCCTAAATAAACTCGATAGGCCAAAGTCAACCCGTGTTCTCCCTTACGGGTGTAGTCCCCCgatgtgtaaaatataaatattacacgaatgtatttatgtatttctctttcTAGTGTACGtttgatataaatgtaattctCCAAACCGGACGCGCAATTTGCGTGCGTAACTGCAAATGAACGTGCCT
>TU108960
gctTAAGCTACAAACCTTTATTGAAAAAGTATTTACAGGAGTTAAAACCACACATTCTAtactgttaaacaaaacaatcaaaaagatCAAAAGATCAAACCTGGCACTTTTAGGAATCTGTGCCTCTCAACAGGATATTTAAACCTCACAAAACAAGCATAACggacaaaagaaaaagatcGTTTTCAGTAAAGGGAAAGGTTTTAAGCAAAGGGGCTAGAGTGAACATCCCTGCATTATTTACATCTGGGATTTCTTGAAACTCCACTAAATCTAATTTAAAGATCACTTGAAAGgaaaatactgtacatcaatGGAAAATTACACTGGTAAAATGAGCACAAtgcactttaataaaatacaaaacagagcagGGGTATTCTCCACcctagtcctggaggaccccctaacCTACAGATTTGTATCCCAACTGAGCtctccattacttaattgaacccttaagtaatttgcatttaaattgtgtaactgataagtTGGTTCCTTGGAAAGCTCCTTATACAACTTATACTTAAAACCCCTGTTTACAATGAAAAGGCTCCCATTTAGAAAATGGTAAGTTACaataaaggttcaattaagtaattgagagctccactggaacacaaaccaaaccctgTGCCTGCAGGCCTGTAATCCTGCCAGGTCTTGAGGGCATGGCTCACAGATGCCCTCACAGCCTGCCAGGATTACAGGCCTCCAGGCACAGGGTTGCACACTAACACCAATGTTGGCCTCCAGGACCAGAATTCCCCATCCATATCTGCAGAAACTCATTAGTAGGGTCAGGCAAGATGCAGGTTGGCCCTCTATGGTCCAGACACTTGTTGAAAGTTTAACAGCAGAAGAGTCAGGTGGAGTGCGTGTATGTGGGGGAGAGAGGATGAATAGGATAATCTGAAGGGGGCATCGTAAATTTCCAACTGCTGTGGAGAGGGGGATAGgagcaagagaccactgcacacTTTAAAAGCTCAACTAAACGCACAACTTCGTAGAAAACGTTTCTAAAAAAAGTTCTAGGTTTTATTgatcaatttattaaaatgtgataaCAGGACATCTtggatttaaatgcaaaatacaaactgGTAGCAATGAGACCTcatcacatgtatttattccatCTTCAATTAAAGTGGCTTTTAAACAGCAAGAGATTCATTTCTCCCCCCCAACCTCCCGTCCCACTCCTCTACCAaattcagaaaacagaaaaaaaaaaattcaggaCATGCGAGAGCAGACGACTCCGGAAACTACCCACTGGCTCACAGCTAAGcatctaaaaacaaatgtgcccTACATGTACACTaacattctaaaatatatacaaatgcaaCCATCAGACAGCACTGCTCTGCACTAGGATGCAACTGGTATTCCCTGCAAAAtaaggaggaaaaaacaaaaacaaaataaaagttgccACTGAAGTGGGCGTTACTGCTGTTCGTCCTCTGGACACGAATGCCAAGTCAGTCTCTCTTCGTAGAAAGCAATTACGACCTGAGGACATTTCACGTTGGCTTCTTTGGCTGGTACTAAGTCCGCTTCATCCGATTCTTTCCACTTCATTAAGAACATGAGTTCCCCACTGCTGTCCGTCGCTCCGATGATTCGCTCTGGATCAAGGTTACGAGCAAAACCCCGCGGTTTGTCACTTGCCTCCTTTTTCTTCTTGGCTTTGCTTTCTTCCGACTCGCTTTCGGAAGCGGACTTCCTCTTGTTGGAATCTGGTTTTTCGACTGTGGTTTTCTGTGAGGCCAGGAATGCGTCGATTAATTCTGGGCAGTCAAGGTTCTCCTCCGGCTCCCAGGTGTTGTCGGCATCAGTAAAGCCCTTCCACTTCAGATAATATTCAACTTTGCCATTCACAACCCGACGATCAATCACTTTCTCCACAACAAATTCTTCAGGTTCAACCTCCTCTGCCTTCTTGCCTTTTCCATTTTGCTTCTTTCCCATTGTGCCCTTTGAATCTCCTAAACAGTGCGAGGACGACAACAACAATGCTCTCTTCCCGTCTTTGCTGTATCTACTGGCGCCAAAACCCCCGACCTCTTATAGCGCTACCAGTCCACCGCTACCCCCGCGCAGCGCTTTTAACCTACTCTTCACGGCCTAAATAAACTCGATAGGCCAAAGTCAACCCGTGTTCTCCCTTACGGGTGTAGTCCCCCgatgtgtaaaatataaatattacacgaatgtatttatgtatttctctttcTAGTGTACGtttgatataaatgtaattctCCAAACCGGACGCGCAATTTGCGTGCGTAACTGCAAATGAACGTGCCT

Function

symbol description
cbx3 Enables several functions, including histone methyltransferase binding activity; identical protein binding activity; and transcription coregulator binding activity. Involved in cellular response to DNA damage stimulus and negative regulation of transcription, DNA-templated. Located in chromosome; nucleus; and spindle. Part of RNA polymerase II transcription regulator complex and chromosome, centromeric region. Biomarker of prostate cancer.

NR:

description
PREDICTED: chromobox protein homolog 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108957 True 2405 lncRNA 0.43 6 23482972 23488212
TU108960 False 2328 lncRNA 0.43 5 23482972 23488212

Neighbor

gene id symbol gene type direction distance location
AMCG00021629 NA coding downstream 179226 23265750 ~ 23303746 (-)
AMCG00021627 NA coding downstream 220792 23254939 ~ 23262180 (-)
AMCG00021621 tra2a,LOC107688335 coding downstream 330651 23145357 ~ 23152321 (-)
AMCG00021622 NA coding downstream 355495 23127220 ~ 23127477 (-)
AMCG00021620 igf2bp3,LOC108273237 coding downstream 373221 23096480 ~ 23109751 (-)
AMCG00021637 NA coding upstream 178381 23666593 ~ 23667210 (-)
AMCG00021635 hoxa2aa,hoxa2,hoxa2b,LOC107685611,LOC107684556 coding upstream 183213 23671425 ~ 23673576 (-)
AMCG00021636 NA coding upstream 189619 23677831 ~ 23685846 (-)
AMCG00021639 NA coding upstream 209432 23697644 ~ 23698829 (-)
AMCG00021641 NA coding upstream 220989 23709201 ~ 23710134 (-)
G87282 NA non-coding downstream 1072 23433216 ~ 23481900 (-)
G87269 NA non-coding downstream 110780 23371190 ~ 23372192 (-)
G87234 NA non-coding downstream 285129 23197581 ~ 23197843 (-)
G87218 NA non-coding downstream 376784 23093588 ~ 23106188 (-)
G87203 NA non-coding downstream 391861 23089602 ~ 23091111 (-)
G87427 NA non-coding upstream 588687 24076899 ~ 24077107 (-)
G87428 LOC103376870 non-coding upstream 592524 24080736 ~ 24133311 (-)
G87495 NA non-coding upstream 790425 24278637 ~ 24279387 (-)
G87573 NA non-coding upstream 1057870 24546082 ~ 24548123 (-)
G87627 NA non-coding upstream 1499230 24987442 ~ 24989739 (-)
G87263 NA other downstream 144488 23338251 ~ 23338484 (-)
AMCG00021630 NA other downstream 150004 23329325 ~ 23332968 (-)
AMCG00021619 NA other downstream 321981 23155187 ~ 23160991 (-)
AMCG00021569 NA other downstream 1811657 21666402 ~ 21671315 (-)
G86808 NA other downstream 2399402 21063858 ~ 21083570 (-)
AMCG00021634 NA other upstream 6813 23495025 ~ 23498761 (-)
AMCG00021662 NA other upstream 711324 24199536 ~ 24210205 (-)
AMCG00021668 NA other upstream 854688 24342900 ~ 24363459 (-)
G87674 NA other upstream 1915438 25403650 ~ 25406538 (-)
G87806 NA other upstream 2417232 25905444 ~ 25908005 (-)

Expression


Co-expression Network