G87402


Basic Information

Item Value
gene id G87402
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24029844 ~ 24032117 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU109088
ACCTagctgttgttttgttagttgtttttttatcaaagGACTGTTGTAGAATTAATCATAACCAACTGAAGCCTCTAGTTTTTGTTTAGGCCTTAAACATTTCCTACTCTCATACTCCAAGTTGTAAGgtcaaaaacatttgtttcagtattATGACATTTCAAAAACGCAGATTCCAAAATATCACCAAACGGTTTTCAATAATGCCAAACGGACCTCTTACCAACATTTCCACATCTGTTACCAATCCTGATGAAGACAGGTGTCAAAAAGTGAATTAGAGATCTCTACCAGCACTAGTTGTGATtaacagtgtgagagagagagagagagagagagagagagagagagagagagagagagtgagagagagagcgcgttTGCTTTTATGTCTGAGAGggacaaaaaattaaataagaagaTTCATATACAGTAATAAGGGAAGCACTTACAGTGAGTAAATGTTACTTCTCATGTTGTAAGCTGCAAATCCAGCAAGGGACAATGtagatgtggaaaaaaacataattcagagatttaaaaaaggGGCAAATTCTGCACTGGGGCAAAAAGCTTTCCTCTACATCGAATTGAGTTACTAATTCCATTTGGTGAATGTTGTACCTGTCAGATACTGTGTTTGTAccataatgtattgtatttttcatcagCTTTAACACTCTGGGATATTCTTGTAGTTATTTGAACACCATTGGTGCAGTATCCAGTTTGGATGCAAATGTTTAAAAGCTTTATGATGTGAACAGTATAAAATCTAAACTCATCACAATGTCAAACGTATACACATGGATATCCACAATTCCATAGTGTCTGTCATGTCTGCAGAATGGTTTGTTGAAGCACTGTGTAGTGCTCTATGTAAATTATAAGCATCTTTCTAAATTCCTAGGTTGGTTTCTAAactaacatgtattttaagGCTTCCAATacattcagtacatttaaaagtatactCTCAGTAGTTTCAGATGTCTGGGAATACAAAAAACGCActctttaaaactttattttttgctaCAAGCCAGCATTTTGCTTTCTCCAACTGTGCTACTTTGAGTCAGTTATCATAGGTTTTTGGTTTGATATGTGCAATGTACAGAATAGATAGAGAATAGATAGAGAATAATAGAgaagtacttttatttttgtattaacagTTAATTTTGATGGGATCATAAAAGGTTCCTTCTATTACAAAGGGATGTTTTTACTTAGACCAGTAGGTGGACTATGTTGACTAACAGATGACAGAAATAGAGAGAAAAAGCAATCTGGTGCAAGTGACATTATGTGAAGCATATTCAGCAAAAAGAAGAACCTTGCTCAAAAGTATGGTTCATTCATTTTCCCCGGTAATTTAAAGACCTAGCTCTCATTCTTAAATAAAGCCTTAATATTTAGTAAGTGTTTGGATGCATTACATTGTGATGTAGACAGGTGCACCACATGGAATAGCTTTAAAAGTTCAAGTTTGCCCCAAGTTAGGGATCTTGGAGCAGCAAAGATACCTTCTTTATCAATTGTGCGACTGGCAACGCCCTCCCGAGAGTCTGAGTGTCAGAATCTAATTGTTCACTTCATTTCCCTTCTTATGTTTCGTTAATCGTCTCCCAGAAGCTGTCAGTTTTCATTATGTAAATGCTGAGTGAAGTAAAGTACAGCAATGTAGCAGGAGCCCAAACCCACTCTGTACCAAGGACCTGTTTTATTCACTTGTGTCTGTGACCACGGTGCCCGCAGTCCTGTCATTTGCACCCAGCTCAGTTTCATATCCAGTGCAAATCGTGAAATGGAGAACCAATATACCTTTCAATTGACATCTCCTCAAACacgaaaaagaaaatatgtgcaTGTGAATGATAATAAGGACCAGCTATGCAAAAACCTCTCTGTTGACACTCTGTAGTTACCGTTCCAAAGACCTCTGCAAGCCTAACCACAGTGAGCttcctgtgttttgtgtatctcacccaaaatcttttttttgctgtttttgttctgtgCCCCAGGTTATAGCTGTATGCATAAACATAGGAAAATATTATTTCCGGAGGTATTAGCTACTGGTAGAGCCCTGCCAGtgctaaataattattatagaaAGAGTCCGCATGAGGTCTGATCTCCTGACAGCCTCTGTTTAAGGGCTGCAGCAGTTGCTTTTTGGATATCGCATTAATTCAATTCTGAAGTGCACTGTCAAGCATCTAATAGCTTTCATACTTTATACCTATCAAGGACCAATAAATGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109088 True 2274 lncRNA 0.37 1 24029844 24032117

Neighbor

gene id symbol gene type direction distance location
AMCG00021651 LOC106537063,LOC106517749 coding upstream 271 24020865 ~ 24029573 (+)
AMCG00021648 creb5,LOC107550799 coding upstream 55665 23955929 ~ 23974179 (+)
AMCG00021645 NA coding upstream 146692 23853919 ~ 23883152 (+)
AMCG00021638 NA coding upstream 247017 23779770 ~ 23782827 (+)
AMCG00021631 NA coding upstream 516106 23506699 ~ 23513738 (+)
AMCG00021655 chn2,LOC107685541,LOC107745376,LOC107550834,LOC107596649 coding downstream 96882 24128999 ~ 24135047 (+)
AMCG00021654 chn2,LOC107684543,LOC107550834,LOC107745376 coding downstream 119947 24152064 ~ 24172881 (+)
AMCG00021658 LOC106574036,LOC103150415 coding downstream 188804 24220921 ~ 24232757 (+)
AMCG00021659 NA coding downstream 241978 24274095 ~ 24276540 (+)
AMCG00021665 NA coding downstream 310735 24342852 ~ 24353253 (+)
G87321 NA non-coding upstream 337696 23687325 ~ 23692148 (+)
G87313 hoxa3 non-coding upstream 351241 23673892 ~ 23678603 (+)
G87288 NA non-coding upstream 445508 23489081 ~ 23584336 (+)
G87233 NA non-coding upstream 831975 23197621 ~ 23197869 (+)
G87215 NA non-coding upstream 838091 23145004 ~ 23191753 (+)
G87423 LOC103376870 non-coding downstream 48619 24080736 ~ 24139508 (+)
G87464 fkbp14,LOC107685615,LOC107596753,LOC107743226,LOC107550815 non-coding downstream 184257 24216374 ~ 24218824 (+)
G87482 NA non-coding downstream 228845 24260962 ~ 24261617 (+)
G87525 NA non-coding downstream 327387 24359504 ~ 24360909 (+)
G87704 NA non-coding downstream 1497207 25529324 ~ 25529585 (+)
AMCG00021602 NA other upstream 1318700 22697164 ~ 22711144 (+)
AMCG00021591 NA other upstream 1738703 22270871 ~ 22291141 (+)
AMCG00021560 NA other upstream 2772655 21241666 ~ 21257189 (+)
G86861 mios,LOC106605261,LOC106582151 other upstream 2793764 21235070 ~ 21236080 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other upstream 2796991 21229852 ~ 21232853 (+)
AMCG00021656 NA other downstream 142286 24174403 ~ 24178092 (+)
AMCG00021657 NA other downstream 151091 24183208 ~ 24198827 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 877767 24909884 ~ 24949100 (+)
AMCG00021682 NA other downstream 1244659 25276776 ~ 25372339 (+)
AMCG00021692 NA other downstream 1720240 25752357 ~ 25753253 (+)

Expression


Co-expression Network