G87525


Basic Information

Item Value
gene id G87525
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24359504 ~ 24360909 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU109237
GCCGTTTTAAGATACACAAAAGACAGTTCATACATGAAGAATACCAAACCTATGAATTATTcacatggaaaaaataacatgttaatagCATGCATTTACTGCATGGCTGGCTGTTTTAAACTATTTCCTGCCAATACCACCTGATACTGAGACATTCTCTGCAGGTTTAATATGGATTTCTCAAATTcagattaaaaagaaatcaaatgacaaaagcattgttgttgtttttcatttatttaaactggtATTTAAAACTTGCAGGGGGATGTAACGATTCCCAAGACAGCAGGAATGGATGTCCAGATGTTGTCCTCCAGTATTAGCCATCTCAAATTGCCCTTCTTTTCcaagggaaacaaaacagagcagtTCATTAGTTTTGCAGGAGAGTGATGTAAAAGTCGATCCAATGCTGACATTATTAATGCATGTTGTCTTCATTATTGCTTAGATTTCCATGTAATCGTACTTTTCATCAGGCAGGAATGATTTCTTAGGTATGTTATATTTCTGACAGGAATACTGAGTGTGTAGTGTACAGAGGTTCAACAAAGACAAATGGCATTGATACACAGCAGCAGCTACCCAGCATGCATGTTTCAAAGCTAGTtttgatgagaaacatccaAAACAGAAGAAGAGCTCACCATGAGTGCACCAGGCCAGTGGTGACCAGAGCTGGATCCACAGTCCTAAGCGCAGCAGAAGAAGCGCACATCGTTCAAGGTTGTGTCATCACCATCACCTTGCCTTGGCTCCTGCTTGGTTTCTATGCCGCAGATCCCTCCTCGTGGGCATTCCTCACTCCAGCTGCCGTACTCTCCCCAGCCGAGACCCTGCTGCAGCAGAACCTAATGTTGTTGGCCGCAGTGTCATCACCAGACCCTTGAGGCTGTTCCACTCTCAGCTGGAAGGACTTGAGGACACCGCTGCCGGGACACCACTGGGTCTGTGTCCAATCTCCGAAACTGAGGGAAGATGAAGCATGAGAAACTCCAGTGTTACACTGAACAAGCCTGACTGGTAAAATAAGATCAATAGACTCATCTTGCTTTTAGAAATTCTGTATTCTGgagatttttaattgaattattactGTTGCACTAGGTACATTTTCACAGTTCCCTTTTGCATGTAAGTTACATTTGATAAAAGTGTACATTTGAcaagtaaataaacagataaaagtataaatatgttAAGGAAACCTACAATCCAGCGCGGGCCTCAACTGTAGAAACAGCTGTTGGTTGTCCAGGCTTGGAACAATACAGGCGAATGCCATTCAGCGCTGTGTCATCACCTTTACCTTgatttccttcaacctattacaaatatacactcacctaaaggattattaggaacacctgttcaatttctN

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process
GO:0004806 triglyceride lipase activity molecular_function
GO:0016298 lipase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU109237 True 1384 lncRNA 0.41 2 24359504 24360909

Neighbor

gene id symbol gene type direction distance location
AMCG00021665 NA coding upstream 6251 24342852 ~ 24353253 (+)
AMCG00021659 NA coding upstream 82964 24274095 ~ 24276540 (+)
AMCG00021658 LOC106574036,LOC103150415 coding upstream 126747 24220921 ~ 24232757 (+)
AMCG00021654 chn2,LOC107684543,LOC107550834,LOC107745376 coding upstream 186623 24152064 ~ 24172881 (+)
AMCG00021655 chn2,LOC107685541,LOC107745376,LOC107550834,LOC107596649 coding upstream 224457 24128999 ~ 24135047 (+)
AMCG00021664 NA coding downstream 10958 24371867 ~ 24377488 (+)
AMCG00021671 NA coding downstream 83398 24444307 ~ 24457362 (+)
AMCG00021672 plcl2,LOC106605271,LOC106582018,LOC107688208 coding downstream 153209 24514118 ~ 24522275 (+)
AMCG00021678 kat2b,LOC106588888,LOC106570503 coding downstream 626568 24987477 ~ 25007730 (+)
AMCG00021685 NA coding downstream 1023887 25384796 ~ 25406102 (+)
G87482 NA non-coding upstream 97887 24260962 ~ 24261617 (+)
G87464 fkbp14,LOC107685615,LOC107596753,LOC107743226,LOC107550815 non-coding upstream 140680 24216374 ~ 24218824 (+)
G87423 LOC103376870 non-coding upstream 219996 24080736 ~ 24139508 (+)
G87402 NA non-coding upstream 327387 24029844 ~ 24032117 (+)
G87321 NA non-coding upstream 667356 23687325 ~ 23692148 (+)
G87704 NA non-coding downstream 1168415 25529324 ~ 25529585 (+)
G87765 NA non-coding downstream 1471545 25832454 ~ 25832988 (+)
G87786 NA non-coding downstream 1524537 25885446 ~ 25885703 (+)
G87824 NA non-coding downstream 1730267 26091176 ~ 26094196 (+)
G87939 NA non-coding downstream 2349308 26710217 ~ 26713476 (+)
AMCG00021657 NA other upstream 160677 24183208 ~ 24198827 (+)
AMCG00021656 NA other upstream 181412 24174403 ~ 24178092 (+)
AMCG00021602 NA other upstream 1648360 22697164 ~ 22711144 (+)
AMCG00021591 NA other upstream 2068363 22270871 ~ 22291141 (+)
AMCG00021560 NA other upstream 3102315 21241666 ~ 21257189 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 548975 24909884 ~ 24949100 (+)
AMCG00021682 NA other downstream 915867 25276776 ~ 25372339 (+)
AMCG00021692 NA other downstream 1391448 25752357 ~ 25753253 (+)
AMCG00021693 NA other downstream 1482785 25843694 ~ 25870195 (+)
AMCG00021703 galnt12 other downstream 1791159 26152068 ~ 26197076 (+)

Expression


Co-expression Network