G87694 (rpl15)


Basic Information

Item Value
gene id G87694
gene name rpl15
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25412404 ~ 25460562 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU109455
ATGaattggggaaaaataaaatatcaagtgAAGGTAGCAAATGCTCATGTATGAAATGCTAATCAAGAGATCATAGTTAAGACATTAATCAAGCAGAGAGGTACCATCGAAAAAGTGTCGTTTATTAGATGAAATATACAAGCACTGCAGCAATTAGCGGTAACGAGGCAGCTGCAGGGTGTTGCGTCGCCTCCAGGCAGCACGGCGAGACCCTCCAATGGTGAGGTGGAACTTGTGGCCCTTGCCCAGGCCGCGGCTCTTCTTGCCGGCTGACGTCAGCCCACGCATCTCTCTGTGCTTGTGGACAGGCTTTGTGATCCATTGGGCATCAGGGTTGCGTCTGATGGCCTTGTGGAATGGATCGACGAGGATGACCTCAAAGAACTTGTAGGTGGAATCTTCACCCACCCAGTAGGAGTTCAAAACCCTCAAGCCCCCGCAGTGACGGCCAGCACGCTCTCAGCCACAGACTGCAGGCTGCGGGCAAACTTGATCTGGTTGACACCATGGTGGACAGGTTTACCATAGGTGGCTCCCTTGGGCACGGGGCGCTTGCGACCACCACGGCGCACACGCACACGGTAGATGACGTAGCCTGCTTTGCCTTGTATCCCAGCCTGCGGGCCTTGTCGGGTCTGGTGGGTCTAGGAGCCCGGTGCAGGCCGGACAGCTGGCGGTACTGCCAACAGCGGACCCGGAGCAGAAAGCGCATCACATCGGACTGCTTCTTCCTCCATAGCTCCTGCATGTACTTGTACGCTCCCATTTTGGTCTAAATGATGGCGTACCAGccggaaagagagagagaactatcCCATCATGCT
>TU109456
tttttttgttttGTACCATCGAAAAAGTGTCGTTTATTAGATGAAATATACAAGCACTGCAGCAATTAGCGGTAACGAGGCAGCTGCAGGGTGTTGCGTCGCCTCCAGGCAGCACGGCGAGACCCTCCAATGGTGAGGTGGAACTTGTGGCCCTTGCCCAGGCCGCGGCTCTTCTTGCCGGCTGACGTCAGCCCACGCATCTCTCTGTGCTTGTGGACAGGCTTTGTGATCCATTGGGCATCAGGGTTGCGTCTGATGGCCTTGTGGAATGGATCGACGAGGATGACCTCAAAGAACTTGTAGGTGGAATCTTCACCCACCCAGTAGGAGTTCAAAACCCTCAAGCCCCCGCAGTGACGGCCAGCACGCTCTCAGCCACAGACTGCAGGCTGCGGGCAAACTTGATCTGGTTGACACCATGGTGGACAGGTTTACCATAGGTGGCTCCCTTGGGCACGGGGCGCTTGCGACCACCACGGCGCACACGCACACGGTAGATGACGCCTTGCTTTGCCTTGTATCCCAGCCTGCGGGCCTTGTCGGGTCTGGTGGGTCTAGGAGCCCGGTGCAGGCCGGACAGCTGGCGGTACTGCCAACAGCGGACCCGGAGCAGAAAGCGCATCACATCGGACTGCTTCTTCCTCCATAGCTCCTGCATGTACTTGTACGCTCCCATTTTGGTCTAAACTAAGAGAGGGAAACCGGTCAATTTTAAGTACCACTGTACAGAAACCAGCATTAACAAAATGAGCTTCCTTTGCCACCGACCACTAACCCGCTCTCTCAACACCTGGAAACAAACCCGGCTCTGGCAGTAACGCGTTTCACGGAGACGCAGCGGCTGCGCTACAGCAGTGCGAGCAGCCATGTTACCTGCAGGCCGCGCCGAGGAGCGCCAGCGCACCTCACTCAGCGTCAAACACTTAACGGATTAAATCGAAGATGGAGCAGTTTGTAAGACCGGTGGAAATACACGGTAAAACAAATCAGAGCAGGGAGCCATGTTGCTCACTCACTTCCACTATACTGGCCATTACACGTAACCTGCATCTTTCCCAAAAGTGCAATGACCATTAATCTCTCATTTTTCATGGTAACGATAAAATAACGGTTACATCGAAGTGCTTGGAGTGTCCTCTGTTTAATTCCAAAGTGTTAAGAGCCGATGGCAACGTTTAATAACAACAGTTATGTGGATTATACAGACAGCGAAAAAGACAGAATCTTTCTTACATGATGGCGTACCAGccggaaagagagagagaactatcCCATCATGCT

Function

symbol description
rpl15 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 12. Orthologous to human RPL15 (ribosomal protein L15).

NR:

description
PREDICTED: 60S ribosomal protein L15

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109455 False 824 lncRNA 0.54 4 25412404 25415088
TU109456 True 1281 lncRNA 0.52 4 25412404 25460562

Neighbor

gene id symbol gene type direction distance location
AMCG00021686 nkiras1,LOC106588667 coding downstream 842 25406702 ~ 25411562 (-)
AMCG00021681 NA coding downstream 208503 25202404 ~ 25203901 (-)
AMCG00021680 LOC104951919 coding downstream 327322 25074347 ~ 25085082 (-)
AMCG00021679 NA coding downstream 399644 25007690 ~ 25012760 (-)
AMCG00021677 NA coding downstream 425444 24975268 ~ 24986960 (-)
AMCG00021691 top2b,LOC106570304 coding upstream 222208 25682770 ~ 25704828 (-)
AMCG00021690 NA coding upstream 245014 25705576 ~ 25713766 (-)
AMCG00021696 NA coding upstream 258795 25719357 ~ 25799664 (-)
AMCG00021695 NA coding upstream 413329 25873891 ~ 25884232 (-)
AMCG00021699 elmo1,LOC107710279,LOC107556397 coding upstream 502352 25962914 ~ 25976336 (-)
G87622 NA non-coding downstream 418162 24988401 ~ 24994242 (-)
G87627 NA non-coding downstream 422665 24987442 ~ 24989739 (-)
G87573 NA non-coding downstream 864281 24546082 ~ 24548123 (-)
G87495 NA non-coding downstream 1133017 24278637 ~ 24279387 (-)
G87428 LOC103376870 non-coding downstream 1279093 24080736 ~ 24133311 (-)
G87707 NA non-coding upstream 70911 25531473 ~ 25531759 (-)
G87717 NA non-coding upstream 196820 25657382 ~ 25657793 (-)
G87719 NA non-coding upstream 216421 25676983 ~ 25677417 (-)
G87720 NA non-coding upstream 217625 25678187 ~ 25681020 (-)
G87756 NA non-coding upstream 308834 25769396 ~ 25769896 (-)
G87674 NA other downstream 5866 25403650 ~ 25406538 (-)
AMCG00021668 NA other downstream 1048945 24342900 ~ 24363459 (-)
AMCG00021662 NA other downstream 1202199 24199536 ~ 24210205 (-)
AMCG00021634 NA other downstream 1913643 23495025 ~ 23498761 (-)
G87263 NA other downstream 2073920 23338251 ~ 23338484 (-)
G87806 NA other upstream 444882 25905444 ~ 25908005 (-)
AMCG00021700 NA other upstream 630665 26091227 ~ 26105391 (-)
G87871 NA other upstream 691543 26152105 ~ 26154375 (-)
AMCG00021719 ndrg1a other upstream 1213516 26674078 ~ 26718508 (-)
AMCG00021723 hsf1 other upstream 1439401 26899963 ~ 26919844 (-)

Expression


Co-expression Network