G87720


Basic Information

Item Value
gene id G87720
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25678187 ~ 25681020 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU109483
ttttaaaataaatatattttattattttgccagGAGATTCCATGGTAAAGGTAAACAgtatatgaacataaaaagcaTTGTTAATGTACAAACAAGAGCCAgtgaaaatacattacagagatagcaaatacaaaataatattccaACAGCAGGGTTTCAATGAACGGGCTCAGTCGGAACCGAATGAAAAGGTAGAGATGTCCGTGTGTACGGTCTGTTCCTGCGCCTGCGttagtgtttttaatgaatCCTAAGGTAACTGAatttgaaagtttctattaacGCAACGCTACAACACTTCTGGATAGCGATTCACTTATTCAGccaatttacatacattttcgGACTGGCTCAACCCAAAAAAAAACGACTGTCTGCTGCCGAACAGGAACGCGATTTTGCAGCGCTTGTGATGCGTCTGATATGTGGGATTCAGGGAGACACTTTCAACCTGAACAGGCCGCCGCGCTGCACTTCAGCGATGCGATTCAGTATCTCGGATTTGAAACAATACAACTAAATGGAGGAATGACATCACGAATCACAGGTATTACGATTTCGGTGACTTCAGCCTTTGTCTGTATGTGACGTAAGAGTGTTGAATATGAAGTTCATGTTTAAAAGTATTCTTTCTttcataatattgtattataagtatatatttagaCATATTACTTAAGATACATAATAACTGACTGCatttacaaacaatacatataagGTCCTCACCCTTTTGATGATATGTGTATTAGGGCTTATTATATCAGAGCATTCACATCATGTTTTGCTGTAGAAATCTGTATTTGATTTAGAACTACTTTGGTTTAATCTCCGACATGAATACAAAAGACCCGTTAAAAATTGTGCAGAAAATGCACAAATTCTGGGAAATGCAATGATAAAAACTTTTGAGCAGAATTGGCAGTTTTAGATACAAGCACCTGCTGTTTCtttaacaacaagaacaacaacaacaacaacaaacgtGAGCGCCGCCCTGTTCCCGGATGGACAGTCCCAGCCTGGTCGGTCTTATCTCAATAGAAACATTTACtccgaatatatatatattacatttgctGGGTATTTACAAATTGATGAGTTTTTAAATAGAGAAACTATATTTACACACTAGCGAAATTAAAAGTTAGAATAcggatagaaaaacaaacacatttaaatacaagcaAACCATTAGCCAGCATACCCGTCAGTGGGAATGGGGACAGAGGTCAGACATTCAGGCCGTGACAGGGATGCGGGTGGGCAGTTGCTCATTGTCCTCCCAGTGAGATATCACGACggactgtgctgctgctgctgctgttattcTTGTTGTGGCACAGTGCTCTGAGCCCCAGGCCGCAGGGTTGCAGATATTTTCCAagcttcctttttcatttttaaaccagtTTCTGCTCAATTGAAACGTGACATCGCTGGGACTGACTGAGTGAATCTTTTAGTCAGAAAGTTAGAATTCTTTTTAAGGCATTTATAGATTGGCGGGATGACAGGTTACCTAAATGTGTCTTTAACTCATCCCAGCACCTATCAGTCATCCAAACTCTTCACTTAAAAGTATTGGGGAAACGCATGAACAGTAAACCATGATGATGCTGTAACTGATATTATTTATAGAGTAGGGGTATTGGAAATGAACCAGTCAAATTAAACCACACTGATGCGCAATCTCTTAAACATTGAacttaacaaaataatttgcaagCTTTGAGTTTCTGATAAGTGCTATGAAGATTGCAAAAAACAAAGTTCAGTCTTGTAGAGGTCGGTTTCCTTTAGTGTATCGAGGAGCAAGAAACCACCTACTCACATTCAATCACATCTGTGTAGTGTTTTCTGGTTTAAATCAGCCTAACTACAGCAGTCACACACTGAAACACGTTGTTAACTGTTGCTAACATGACAGGCATCAACACTGCCTCACTGAGGGAACTGACTTTCTATCTGACGTGTAAAATAATGACCGCAGCGGTCAATAAACCTGTCTTCTCCAGTGGGACCATGACTGATATTTAAATCTGACTGATACTGCCAAACAACACTGATgggagaatttaaaaaaaggtgaaaaGTGATTTTAGATTACATTGGTCCATTCAAATCCACTCAGAATCTGTGCAAAGCCAGCTGGAAATAATTGAAATGGTCTCCTTATTGAAAATCCCTCCCTTGACAGCACCAGCACTTGTTGAGCAGAGCTGCAGATTATGCCGACAGAAGGGATAGAACACATTCTGCCACTTCTCTcgtcttttctttttgttcaatTGGAAAATAAGACCAAAAcccaattttaaatatatgaccAGATATAAAATAGACTTCCTTACTAAGCCAGAACATTCTATATAACCATTGTTTAGGACTTAATAAGCCAATTTTAACGTTGATGTATTGCCTTAAACATGGTCATATTTAAGACAATGGAAAAGCACCACAAAGTCATTAGAGAAACAAAGTTTAACCATATAATGGTATGTACAATGTATGCCAACCAGAAATATAGAGTAAAACCCACTTACCGAGCTCTGAACCCATCATGCAATGAATTTACATAATGTAAACCTGaagttttaaaccatttttagGGGTCTGAGCCACGGAGCTCTGAAATTCAAGGGTACAGTTTGAAGtccaaaaaaaaaggttaagaGCTTAATAAGACTTATACACAATGCATCGGTCCTTTCAGGCCTTagtgttgtaaaaaaaaaaaaaaaaagtaaagcaaagACAGAGCATCTTTGAAAACTTTTCCGGCCTTGTCTTCCCCCTGTATTGTGCAAAGGAATGTCTGAAAGAGTTTTTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109483 True 2834 lncRNA 0.38 1 25678187 25681020

Neighbor

gene id symbol gene type direction distance location
AMCG00021686 nkiras1,LOC106588667 coding downstream 266625 25406702 ~ 25411562 (-)
AMCG00021681 NA coding downstream 474286 25202404 ~ 25203901 (-)
AMCG00021680 LOC104951919 coding downstream 593105 25074347 ~ 25085082 (-)
AMCG00021679 NA coding downstream 665427 25007690 ~ 25012760 (-)
AMCG00021677 NA coding downstream 691227 24975268 ~ 24986960 (-)
AMCG00021691 top2b,LOC106570304 coding upstream 1750 25682770 ~ 25704828 (-)
AMCG00021690 NA coding upstream 24556 25705576 ~ 25713766 (-)
AMCG00021696 NA coding upstream 38337 25719357 ~ 25799664 (-)
AMCG00021695 NA coding upstream 192871 25873891 ~ 25884232 (-)
AMCG00021699 elmo1,LOC107710279,LOC107556397 coding upstream 281894 25962914 ~ 25976336 (-)
G87719 NA non-coding downstream 770 25676983 ~ 25677417 (-)
G87717 NA non-coding downstream 20394 25657382 ~ 25657793 (-)
G87707 NA non-coding downstream 146428 25531473 ~ 25531759 (-)
G87694 rpl15 non-coding downstream 217625 25412404 ~ 25460562 (-)
G87622 NA non-coding downstream 683945 24988401 ~ 24994242 (-)
G87756 NA non-coding upstream 88376 25769396 ~ 25769896 (-)
G87767 NA non-coding upstream 122320 25803340 ~ 25809204 (-)
G87800 NA non-coding upstream 204314 25885334 ~ 25885977 (-)
G87803 NA non-coding upstream 215938 25896958 ~ 25898041 (-)
G87882 NA non-coding upstream 713931 26394951 ~ 26395179 (-)
G87674 NA other downstream 271649 25403650 ~ 25406538 (-)
AMCG00021668 NA other downstream 1314728 24342900 ~ 24363459 (-)
AMCG00021662 NA other downstream 1467982 24199536 ~ 24210205 (-)
AMCG00021634 NA other downstream 2179426 23495025 ~ 23498761 (-)
G87263 NA other downstream 2339703 23338251 ~ 23338484 (-)
G87806 NA other upstream 224424 25905444 ~ 25908005 (-)
AMCG00021700 NA other upstream 410207 26091227 ~ 26105391 (-)
G87871 NA other upstream 471085 26152105 ~ 26154375 (-)
AMCG00021719 ndrg1a other upstream 993058 26674078 ~ 26718508 (-)
AMCG00021723 hsf1 other upstream 1218943 26899963 ~ 26919844 (-)

Expression


Co-expression Network