G87824


Basic Information

Item Value
gene id G87824
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26091176 ~ 26094196 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU109615
TGGTACCAATGCAGAATTTTGGGTTTCTTTGGAAATAATGAGAATACACCATTGCTTGCAGTTCTCAAATGCCCGGTCTATTTAGAGACATGGCTTTATTAGGCAGACTTATATTAGCAGCTTATTCacattacacatacacacaaccaAAAATAATCCTGCAGAACTGAGGACCTCAGCCAGGCTATCCCACCAACTCATCACGAGCAAGCACCATTTGTTTGCTGGGCATGCATGTTTCAGATAGGATAACCTAAATTAGACTGAAATCAATTTTTGGCACCCTGGAATTTTCTCAAACTAACAGAAAACCACTATTTACAAGATTATTGTAGATTCCTTACAGAACCCCCTGCCCCATAACCCAATTTACTTGTTTCTTCATGCGAACTGTGAAACGTGGTATCAATATGGTAACTAATGTAATTTCCAACAGTTAGTACACTAATGGTTAAACAAATGGTTACAgaatgagagaaataaaataaacgataaaaaatatatgtatgtccCATTGATaggtataatattgtaaatcgATCATATTTCTACGTACAACTAATTCAATAAGCCATGTCTTTATTaccaatatacatatatattaaatacagctTTGCTTGAGTCTCGCCTCAGAGATCGTGAATATGAGTACAATTAGACCTTTTTCCAAAATAGATTAAACTTCTCAAGATAGGAAAGCATACAGAATGATCCATGCGGGTTTGTCACAAAAACCAAGCCTGCGCGTCACGCTTGCACCACGCAGGCGCTCGCAGTGCCGTCACTGCCTGTGTTGCAGCTGGAGGTCAGCACCGTCTACACTGCACACAGGGACGAGGACGGTAAATGCATATCCACTAGAAATGCtgccaaaatacaatacatctattcattattatacatttcctgAGTAACACAGAAATAGTACATTTGCACAAAcggattatttttttcagttgttggAACAATAGTCCTGAACGCTTTTTAGCCGTCCTCATCAGCATTTCCTGAcaatacagaacaaatacacaaacaaacaaacaaacaacgaCGACGCACATACTGGACAGTCTGACAGAACCAAAGCAGCGCTAACCATCCCACAAGGACTGCGAGGAAACAAGTGCCAATTTATTAAACACGGTTGTAGTTAAGCAGATAACAAAACCACTAATTGTAAAGAATATTATGGCGAAAACTAAAACACGAATAGCATGTTTTAATAACTCACTTTgatacaatattataaaaaaatcgATAATGTGCCTAGATACAAACTAATTGCTAAAGTATCCCGTTATACTTGGTAGTAGTCTAAATGGTAATATAGACGTGTACTGCTAATATAAATTATTGCAATGTTTTCTCCCTTaatgtaataaacacaaattatacattacataaaaagtCCCTActaaacaacatattttaagatCGTATGACGTTTTTATGACTATGGAAAATGCATGATGCAGTTGAACCATAACTAGATAGTAACATCCTTAAAAATGAACATGGGTGTCTTTTTAAGAATATTGAAACAGGAACACAAATCTACCCGTCTATAATTAGAGCATGTATGAAACtcactttaatatttaacacattgcatatctcataaaaataaaaaacctatatatatgaatgatagatctaagttaaatatttaaacaatcataaaacaaaataacagtatatgtatttatttattgcaaaatgacctgttaatgtactgtattaagaaatttaattatgctttcaatattttaacaaggtatttaaaaaacagtaaaaaaaaaaaaaaaaacatacagtgaacCTATTTCAATTgattgggaaaaataaaattaaggaCCTTTTCCTTTAGAACACCAAAACTTTTAGGTAAACAATGTAAACAGCATGAACAAAAATCATTTAAGAAAGAATTGTAATAGcctttgtatgtatatttggtCTTATCCCATCACAAATAAGCCCCCCAACAAGTTAAGgccaaacagtttttttttttattttaaatgtaaatatgttagCTAATTAATTCAATGCCCATAAAGGCGATCTTCATATTACCAACAAGCCAAGTTGAACACTGTACCCAAATGACTATTATCCAAAAAATAAGGTGTGCCACAAATCCACTTCTGTGTGAAGCCTTGAGGCTTTCAAAGTACACATTCTTTGAAAAGGCCTTATGTAAAACTATCCAAAAATACATCTATACTTGTAAATATCAAGAGGTTAAAGGCTTCTGAATTCAAAGAAGCtacataaatgaaaacatcagaATTTGAACATTCAAAGACAGAGCTTGCTTAAACAtacacctacatttttcaattcaatttcaatttcaattattgaaccccaattaaataaacacactaagTCTCCTAGCCTTATATCGGTATGCAGGCGTTCGGCCCTATTCTGGTGCAACACAGCAGGCTGATACTCGGCAGTGAAGATAGTCGGTTCTCTGGCACCAATATTACCAAAGGGATAGAGACTCTTTGCGTGGGCCCCGAGATGCTCTGGAGGAATCATTTTCCCCCCATCAAGACATTAAACTACCAGAGGAAAGACCTTTAGAAGAACTGCAGATCATTCCCCATACATCTAGAGTTAAGCTCACTGGCAGATGACAGACCCTTCCATTTCATCTCAGTTTGAGGATTTGAATCCCAGAGCATCAGACTCCACTTCTTATGCCCAAACCACTGCCACAGTTTAGCTTCATATCATTCACAGAGAAGAGAGGAAGTCCTGCAGGCCGCCcttcttgttcttttgtttttcttcaatgatCAATAACCTTTTGAGACGAGAAAATGCAAACTTCTTTGCACTGGCTGACttggaggaagaggagctggCAGGCTCAGCGGAAACCGACCTGTGAAGGGAAAGAAACCCTCCATGAGTTGTGTTTTCTAGGCGAGAGGCACATGTATGTTACACATGTGCAATGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109615 True 2977 lncRNA 0.36 2 26091176 26094196

Neighbor

gene id symbol gene type direction distance location
AMCG00021697 NA coding upstream 147790 25922202 ~ 25943386 (+)
AMCG00021694 LOC108441798,LOC107698647 coding upstream 258792 25803425 ~ 25832384 (+)
AMCG00021689 NA coding upstream 374590 25714584 ~ 25716586 (+)
AMCG00021687 rarb,LOC107372434,LOC107700643,LOC107717720 coding upstream 412995 25632186 ~ 25678181 (+)
AMCG00021688 NA coding upstream 475911 25592537 ~ 25615265 (+)
AMCG00021704 NA coding downstream 26655 26120851 ~ 26121836 (+)
AMCG00021702 LOC106588954,LOC103026965,LOC106570445,LOC102291972 coding downstream 36286 26130482 ~ 26148080 (+)
AMCG00021706 gabbr2,LOC107653854,LOC107724329,LOC107710365,LOC107670291 coding downstream 241454 26335650 ~ 26371009 (+)
AMCG00021705 gabbr2,LOC102793833 coding downstream 323110 26417306 ~ 26432305 (+)
AMCG00021708 NA coding downstream 431074 26525270 ~ 26533407 (+)
G87786 NA non-coding upstream 205473 25885446 ~ 25885703 (+)
G87765 NA non-coding upstream 258188 25832454 ~ 25832988 (+)
G87704 NA non-coding upstream 561591 25529324 ~ 25529585 (+)
G87525 NA non-coding upstream 1730267 24359504 ~ 24360909 (+)
G87482 NA non-coding upstream 1829559 24260962 ~ 24261617 (+)
G87939 NA non-coding downstream 616021 26710217 ~ 26713476 (+)
G87942 NA non-coding downstream 626713 26720909 ~ 26737883 (+)
G87961 NA non-coding downstream 714061 26808257 ~ 26810867 (+)
G87962 csk21,LOC107734013,LOC108425256,LOC105910791,LOC105902032,LOC105022821,LOC108267736 non-coding downstream 718834 26813030 ~ 26817282 (+)
G87993 NA non-coding downstream 802529 26896725 ~ 26906365 (+)
AMCG00021693 NA other upstream 220981 25843694 ~ 25870195 (+)
AMCG00021692 NA other upstream 337923 25752357 ~ 25753253 (+)
AMCG00021682 NA other upstream 718837 25276776 ~ 25372339 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other upstream 1142076 24909884 ~ 24949100 (+)
AMCG00021657 NA other upstream 1892349 24183208 ~ 24198827 (+)
AMCG00021703 galnt12 other downstream 57872 26152068 ~ 26197076 (+)
AMCG00021707 NA other downstream 440897 26535093 ~ 26569148 (+)
AMCG00021745 NA other downstream 1538719 27632915 ~ 27637084 (+)
G88238 NA other downstream 2684119 28778315 ~ 28778733 (+)
G88276 NA other downstream 2966691 29060887 ~ 29065339 (+)

Expression


Co-expression Network