G87884


Basic Information

Item Value
gene id G87884
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26432144 ~ 26437893 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU109689
gcgacaatttattaaaaattgatCTCATGCAGTATAAGGGTACAAGAAAATGATTGATAatttacagttgtttttttcttttctttatatatatatattccgaaCAATTCCAGTCtattatttaaagcatttaattttttagtgCACTAAACATCATTTGGAAAACACTGGTGGGGCACAGCCTCTTcataaatgtacattgtttgTTGCAGTATAAAAAAAAGAGGAACTAAAATCAATTTGTCATCTTTTCCGTGTGGGGTGCTCATGTCTGcagaaagtaaaaaagaaaacaacaaaaaagttctATATGGGTCGAGAACTACAGTATCATTTAAGACATATAATGTACTGCATGTTATAAACGTAATAAACTGCACACAGTCAGTATTCACAGACAggcaacagacacacactcacctcaCCTCCAAcactcctatatatatatatatataatagagagagagagagagagattttatttttttcatcctgCTATCTTAGAATAATATTTCTACAGAGAAATtagtgtatacattatatacagttaCAGTCCTCTTCCCCTTAAGGGATGAAATGGCCTTTATTTTGTCATGAACTGTCCAGTTGTGGTGTGTGTTAAGGAGGCAGCAAAAGGTGAATTGCACGCGGCAGACTCTTTAAgaattgcaaagaaaaagtCGGGGACcagtttctcatttttaaatggtgtcACCAACTACCCAATGTCTCAGAGTAAACTAgtatataagatatatataaatatccatACAAACAGGTTTCAGAGAAATGGACaacaatttgaatatattttaattgtgatgACCGTCAACATAGGATATTCCTCTTGATTAAGTGTACTAAAAGTATCCAATGCAATGGTTTATTGCCAGTTCAAAAGAGAATGGTTTTAGATTTTGTGATATGTTACACAACATGCTATTTTGGACAGATTGTCTTCTGAGAAGGTGTCCACGGGCTGACATACCACTGATTTTGTGTCTCTGATAGTGCGTCTTAGTACCCACAGTGCCTATCGTCtcaagaataaaatgaaaatgataggAAACCTACATgcttttacaaattatatatatatatatatatatatatatatatataatattcctACTTACTTATGTTTTTACTTAtaaatgcagatttgtttttctccaaaagctttttgttgtacttaacacaaacacatgagAATTTCTgtacttttgacttttttttttctctctagaGGAAAACCCAGATGTCAAATGCATTTAGTGAAAGATTTGGAAATCAGTGTGGAAAGTAACAATGACAATTCATACTATAAATCCGTGATTCTCAACCACAGCTTGAGTGGCTACAATCGGTTTTGGTTCAACTAGATGATTATGATTTTTAGTATTATTGGGATACACTGGAGGCCATAAAATATGTCAGTGTTGGTTTGGCTGTGGGTGTTATTCTGTGTGACTAACTCACAACCTGAGCTTAGAAACATAGATCTCAATGTTCCACAATTTCTTTCATGTTCAGAATTACAAATCTAGAGAAGGCATCGTTTTCAATGTACCTTGTGACTTTCTAGTCTGGCAAATGATCATTTTGAAcattgtcaaaacaaataattaattactttatgtAACTGATCAAGCAGTGTTGTCTTTTGAAAATCACTGTGCAAACAACTATTGGATGTCAGGAACACATGCTCTGCAAATCGTACTGTGAGTCTTGCAAAGTCCAAGTATTCTGCAGATTcaaaaaatatgattacaacccaatcatgttttttgtttttcttttttatgttttcacttTATTGAACCATGATGTGCAAATGAAATGCAGTCCATTACATTGTGACACAAGAATAAGCGCGCACACAGTGCTGGGATAGACCACTATaggttataaaaatgtatttgtgattttgtgtaatatttatattataccaCGTTTTACTGCTATTTCTACTGTACAATACAGAGATACAGATACTGTATATAAGAATGAGTTGCCAGTAGCAGCTAGAATATCTGAACCATGGTTTTGAGCTCAATTAAACACAGGATTTTATCAGTCAGgatatttcagtttcacaacATCAACAAGCGTTTTCTTCTCTccgcctatatatatatatatatatatatatatataatagagagagagagaaaaaaaatcaaattatattcatGTGTGAATGGCTTTTGATTTTCCACCATGCTTTCTGAAAAGAGAAAAGCggttttgtaaaaataaaggttAGAGTACTTATGAGCCCTTTAACTACCAaaactggtttatttatttatttagattataaCAAGTTATTTTCTCGtttcaaaaacacacagcatgtAATTAATCCCAACCTCCAAGGAAAGCCGgagcaacaaaataaaccatctcTGACCAAACCCCATCATTTACActtaacataacatttaaaaactgccTGTCATAGCTCTggaagttaaaatatatttaatagtattttttttttactttctgtaaTTTCTTCTATTTGGAAGATCAACTGATTTAATGTTACACAAATACTTATCAATTCAACAGAGTCTGAGAAATCTTGTTGAATGGGGCATTAACTGTCTTGTTTATGCCTGGTCACTGAACATGTATTGCCTGATTCTGCAGGAATATAAACCAAATGAAGGTAGTAAGTTTATCTTCCATTACTTTTTTAACATCCCGTTACTTAGTGTATATAACTCGAGTCCATAAAAGGAATAACATCTCTAAAAAATAGGCTACTTTTTGCACACATGCCAGATAttgaataaataacagaaaatcaGGAGTCACCAGCAATGCcttaaaacatgaattatgaCATTCCATCTTTAGATCTTTCCAAAACTGAAGTGTCAGTGCAGTCATGCCTTCatcacagccacagctcgcaggtttttgtctttctaaagatgaaaaaaaaaaaaaattgaattcaCATGCAGGAGCTAATGTTCTCGGCCTTCTACTGAGACTTTTTGCgttgtctgtttttgttcatatgaattgaaagataatgaaAGATTGTTTCGTTTTCTGGGATGATATTTTTCACTAAATTGTTTTTAGAATAGAAcgttcaaatataaaaaaataaatgatgtcttctttttcaaaaacagaataatttccCTATGCATACTTTAGCAAAGCTGCAGATCAACTGATTCTGAATAATAGTAGCATCTTATAGCTTTTTGTTACCAGTGTTTAaagtttttctttgtattttggaCTACATGGCTCAAAAACAGGCACTTGTTTCATGCACAAATGTCTGTCCTACTCGTATCCGATACTGGCCATATCAATAACAttagatttttaataaatatgttaacatttaagtacaaaaaggaaatatacaCTTGATATAACCCTAATTCACATCTTTATTTGGCTCATGTGTCAGCAATGAACCACCAGTGagttccaaaaaataaaaaactaacgAATTAAATTTTAATATATGATATTGCAGTTGTTGCAGTGCACAAACAATATTCCAATGCTATGGTCAGTCCTCGTCACCTGACCCAAATCTGTGGCCACTGACAGTGACACAACCGGCATCGCTTTCATCTCTCTGTAGCAAATGGTTcaaaaatgatatttttttttcccttgactGAAGAGGTTAAAGCTCATCTTAAACTGAACCCAAGACACCAATGGTGAGTAAAGATATGCTGAACAAGAGTCTCCATTGACATCTGTTGACCTAAATTTAGATCGTGATCTggaggtgtttttttattgtctttttccatttcgtttttctgaaaatgtttgtgtcaagaaaattacatttctccAGCATTGTCACCGTATTTAACATCACTGTTTAAGACATTTTTCAGAATGGAAAATCATTTCAGAGCAAATATGGGGTTAGTTATCGGACGCTTGACCTCTCCCTCTGTGTCAAAGGCCGCGTCATTTTATAACCAAGCCAGACACTCATGCGTATGACTTGCATGTGATCTGAAATCTAACATAGGAAGAGGTTGTTAACATCCCATTCATCTGTATTGATTATTGGTGCAATTTCAATCTTATTTCCTAGCATTTCTATTCACCTTCAAAGTGTTTCAAAAAGGGGAAATGTTCAGTGTTGGCATGTTCTGACAACTGTCCCccaccttgttttttttcccctccctttacttattattttgtttctcacatGCATTACATACTCAGCCTGTTTCTACGTTGTGAGAAACACGCTAGGCCACATTTGTCAGGCCACTTTAGGCAGTGTCTGGATTCAAAAACTATACAGGGACTGTACTTATACTGAGGTCTAGACAGTAATAACTTGTGGGGAAAGGTAAGTGATTATTTGATGAAATGTGCACCTTAGCCACACAACAACATTTGGGGTTGTTACTAAAAGATTCAAACCACTTGGAGACCGGCTGAGTTCCACACCCGCTATTTCAGAAGACTGTCTTCAGTCTTACTTCAGCCAGAGTCACTCCGAGTGAACCTCTGGTTGGCAGGAATGTATTCAGAAGTGGTAtacgtgtgcatgtgtgtgctttttatatCTTTCTGCATatgcacgcatgcacacacacacacaaactcacactgtGCTCCTTATTGACTTCAATGTCTCTTTAGTAAACTTCAAAAAGCATATGATTTTTCTTATGGATTTGCAGAAGAAAGGATACACGTTTGCTGCCCTTTCCGAAAGAGCTGAATTGACAGAATAAATGCTAAATCCATTTCTTTGCTCCCCACTGAGAGAAATCTACACCAAACAAAACTGTTATAAGGTAGGAGCTTCATTTACTCCCTGAGGTTCCTAtgacaggatttatttttagagGGAAAATGGTGGAAGTTTAGGAATACAAATTGTGCCCTGTTCTAGTATTTGAACTGTAATAACTGTGAATGTAAAAATACTGATTATTTACAGTTACTATCAATTCACAACCATTACATGTCATAAGCCAATGCTTTTGTACacccaaaatgaaaatgatttagGTATATGCCGCAAATCAATTGCATCTCTTGGATATTTGTGGATTTTCAATGGGGAATTGGCTGTTCCCAACACGTTGCTTTTTAGAATACCCAAAGCATACTTTGAAGTCAAAAGGTATGCTATTTACACGTCCATTGTTACTTCTATGAAACGTATGTCAGGTTTGGAATTCTCCCTCTTTTCTGCATCCTCAAGACCCAGGCATTTAGTAAAATACTCAAGTTTGACAAGTTCACATATGGTCAAGTAtatgacaaagaaaacaaacatttaaaaaaacaaaaaaacaaaataaaacctttaagcAGATAAGGCTACAGGTCAGGTTGGGTCATCTGTTGCCCACCTCTGCAGTTTGTCAGGTGACTGTGGGTCAGGACCCCCTGTGGCTGCTGGCCTGGATGTCAGTCCCTCTGTGATTGCAGTGTGTGTCGAGTTGAGAGTACTGGGTCGTGTACAGAGTCCCTTTCTGCTGACTACAATATCAGTCCAATAACAACAGGTAGTGtcttccccttctctccttccccccactgcccaCTGATGTGGCTCACAGACCAGAGACCATGACCCGGTAGGACGGGGGCACATGTCTGTGCCGCGGACTGGCACTGGGGCTGACAGACGGGCTGGCACAGCTGGCATCTACCCCCCCTATGGAGGGCAGGTAGGCATGGTGCAAAATTGGCAGTTGCAACGACAGTCTACGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109689 True 5750 lncRNA 0.36 1 26432144 26437893

Neighbor

gene id symbol gene type direction distance location
AMCG00021701 NA coding downstream 342158 26083778 ~ 26089986 (-)
AMCG00021698 elmo1,LOC106570440,LOC106515744,LOC107702083 coding downstream 375287 26025398 ~ 26056857 (-)
AMCG00021699 elmo1,LOC107710279,LOC107556397 coding downstream 455808 25962914 ~ 25976336 (-)
AMCG00021695 NA coding downstream 547912 25873891 ~ 25884232 (-)
AMCG00021696 NA coding downstream 632480 25719357 ~ 25799664 (-)
AMCG00021710 NA coding upstream 2762 26440655 ~ 26472215 (-)
AMCG00021709 NA coding upstream 126313 26564206 ~ 26566938 (-)
AMCG00021716 NA coding upstream 205861 26643754 ~ 26656084 (-)
AMCG00021724 csk21,LOC105902032,LOC105022821,LOC107589440,LOC107693292,LOC107559708,LOC105910791,LOC107670008 coding upstream 367147 26805040 ~ 26824298 (-)
AMCG00021725 NA coding upstream 508279 26946172 ~ 26946690 (-)
G87883 gabbr2 non-coding downstream 13245 26418680 ~ 26418899 (-)
G87882 NA non-coding downstream 36965 26394951 ~ 26395179 (-)
G87803 NA non-coding downstream 534103 25896958 ~ 25898041 (-)
G87800 NA non-coding downstream 546167 25885334 ~ 25885977 (-)
G87767 NA non-coding downstream 622940 25803340 ~ 25809204 (-)
G87980 NA non-coding upstream 360198 26798091 ~ 26800715 (-)
G87992 NA non-coding upstream 454583 26892476 ~ 26895336 (-)
G88095 NA non-coding upstream 971530 27409423 ~ 27409711 (-)
G88153 NA non-coding upstream 1181927 27619820 ~ 27620091 (-)
G88154 NA non-coding upstream 1189227 27627120 ~ 27631668 (-)
G87871 NA other downstream 277769 26152105 ~ 26154375 (-)
AMCG00021700 NA other downstream 326753 26091227 ~ 26105391 (-)
G87806 NA other downstream 524139 25905444 ~ 25908005 (-)
G87674 NA other downstream 1025606 25403650 ~ 25406538 (-)
AMCG00021668 NA other downstream 2068685 24342900 ~ 24363459 (-)
AMCG00021719 ndrg1a other upstream 236185 26674078 ~ 26718508 (-)
AMCG00021723 hsf1 other upstream 462070 26899963 ~ 26919844 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other upstream 2343909 28781802 ~ 28783281 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other upstream 2631308 29069201 ~ 29071760 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other upstream 3292184 29730077 ~ 29742808 (-)

Expression


Co-expression Network