G87942


Basic Information

Item Value
gene id G87942
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26720909 ~ 26737883 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU109766
aaaacatttaaaGTTATAGAGGCGGGCAGACTGGCCAGCCTCgattttaaatacaagggggctgtattgaggctggtcaatgtctatgcccccaccagccagagagagagagtcctctttctccctcagctacgcccgctcctgatcggcaccttgccagttatcatttcaggtgatttcaactgtgctctgagggatgtagaccggAGTAAGCCCCGCAAcgatagatccagcagggacCTCGCTGCGTTCGTagaggactttgaactctgcgacgcaggtcgggacctggtccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109766 True 296 lncRNA 0.54 2 26720909 26737883

Neighbor

gene id symbol gene type direction distance location
AMCG00021717 NA coding upstream 20668 26687100 ~ 26700241 (+)
AMCG00021711 NA coding upstream 40824 26661019 ~ 26680085 (+)
AMCG00021715 NA coding upstream 77588 26640291 ~ 26643321 (+)
AMCG00021713 NA coding upstream 80804 26597621 ~ 26640105 (+)
AMCG00021712 phf20l1,LOC107724788,LOC107671837,LOC107704904,LOC107587800 coding upstream 124559 26579325 ~ 26596350 (+)
AMCG00021718 NA coding downstream 12548 26750431 ~ 26751588 (+)
AMCG00021720 ptp4a3,LOC103029087,LOC108436585,LOC107587801,LOC107714615,LOC107552859,LOC107704902,LOC107724783 coding downstream 46236 26784119 ~ 26802985 (+)
AMCG00021721 NA coding downstream 98957 26836840 ~ 26844877 (+)
AMCG00021722 NA coding downstream 111995 26849878 ~ 26865877 (+)
AMCG00021726 bop1,LOC107693294,LOC107753474,LOC107669991 coding downstream 216274 26954157 ~ 26978899 (+)
G87939 NA non-coding upstream 7433 26710217 ~ 26713476 (+)
G87824 NA non-coding upstream 626713 26091176 ~ 26094196 (+)
G87786 NA non-coding upstream 835206 25885446 ~ 25885703 (+)
G87765 NA non-coding upstream 887921 25832454 ~ 25832988 (+)
G87704 NA non-coding upstream 1191324 25529324 ~ 25529585 (+)
G87961 NA non-coding downstream 70374 26808257 ~ 26810867 (+)
G87962 csk21,LOC107734013,LOC108425256,LOC105910791,LOC105902032,LOC105022821,LOC108267736 non-coding downstream 75147 26813030 ~ 26817282 (+)
G87993 NA non-coding downstream 158842 26896725 ~ 26906365 (+)
G88024 NA non-coding downstream 319491 27057374 ~ 27057611 (+)
G88025 NA non-coding downstream 322299 27060182 ~ 27060389 (+)
AMCG00021707 NA other upstream 151761 26535093 ~ 26569148 (+)
AMCG00021703 galnt12 other upstream 523833 26152068 ~ 26197076 (+)
AMCG00021693 NA other upstream 850714 25843694 ~ 25870195 (+)
AMCG00021692 NA other upstream 967656 25752357 ~ 25753253 (+)
AMCG00021682 NA other upstream 1348570 25276776 ~ 25372339 (+)
AMCG00021745 NA other downstream 895032 27632915 ~ 27637084 (+)
G88238 NA other downstream 2040432 28778315 ~ 28778733 (+)
G88276 NA other downstream 2323004 29060887 ~ 29065339 (+)
AMCG00021772 NA other downstream 2526944 29264827 ~ 29275347 (+)
AMCG00021779 LOC108438266,LOC105891906 other downstream 2640692 29378575 ~ 29385325 (+)

Expression


Co-expression Network