G87980


Basic Information

Item Value
gene id G87980
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26798091 ~ 26800715 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU109817
TGAACAATCTGAAGTGGGTTACTTCCAAGGCAGAAAAGGCTACTGTATCCCAGAGATACTCATCTTCCACTCAGTACCTGGCTGTAGTTCATAGTTTTCCATACAGACATCGACAACAAGGTCTTGAACATGATTTCAGAGCAGCTGGTTTGCGAACACTCTGAGGAGAGCATGGTTCATAAGCCACGTTACTGACTCAGAGCTGAAAAGATCCCCCCCCAACTCTCATGCAAGCCGGGGCTTGGTTTcgtttttctcttctctcatCGTCTCATGACACCACCCCTATCCCCACTGGGGCCGTCAGCTCTGGGTGAGGTATTGTAATGtcttttgtagttttgtatgaaacaatgtaaaaaataacttctattaaaaatacacaagtcTTCCAAATgctcccccccccgccccatcACCTCTCATCACTCCCGTCTCTCTGGAGTGTGAAAAAGTCATCTGAGTGGTGTTACAGTTAAAAGGGACATGCACtaggaaatgtatataaaattacatagaaaaacaaacgGGACAAAAGCAGTTGTTAAGCATCATGATGGCAAATTAACACAGAGGTCAAAGTGTACGCGTTCCGAGGCGGCGGTGGCAGGTAAAACACAGACGTGATGGTCCGTGGATGTCCACACTGGCTAGGCTTAGAAGGAATCTGCTTAACGAGGGGCTATGGCAGCATCTGTGGCATTGATTGTCTTTTCAAATGTGCAACTCAGAAAGTCCACAAGAGGGGCGGCAGTTGCAGCGCCTGTCGACAGTGCTGTTGAGATCGGAGAGTGTGCTTGTGGCACTCAAGTACATCTATTAATGCTTAGGAAACGCAGTGgggcttgtttttgtgttttgttgcgGGAACGTCATCGTCCTTACGCTAAGGGATTAGCCAGCACTTGGAATTAACAGGTACAAACGAAGACTAAATACAAGAGGCTCGTCTCTAACAGCCCTGAGCTCAAGATAAGTCAAAAAGAGGGTCTCCTGTTTAGCCTATTGCCCTTGGAGGTGAGCTGTTCACTTCAAACTGAAAGGGGTGGAGAGTCCAAGTGCATTGGTTGCGATCAGTCAGTTTCCCATTAACCGTTTGGATCCGTCAGGGAGGTGTCCAGGGTCACATGATGCAGCACTTATTCTTGTGGTTGTGGGGGTCTTTGAATCGCAGTCTTTGTTTGGGGCGATATTTCTCCAGGTAAGTCAGCTGCTTGCTGTTGATGGCCCCCCTGCGTTTCTGTCTGATGAACTGAATAGCATCCTCATACTTCATCCCACTCTCAATCAGGGCCAACGCCACCAACACGGGAGCCCTGAAATGGAAGGAAATGATTATACTGGATGTCCTCATGCGTTTCTCTATTTTATTCAGACCAACAAAAAGGGTAAGTGTGGATGTGTAGTAAAGCTCTGCTATGTATCAGTAACACAGCACCACCTAgtgctcattattattattttataaacatggCCAGGTACAGAAATTGTACATTTGTACTATGGGGGCGATATTGCTGCAAGTTGTTTCAGTAATGTCTACCTACAACACAAGATATGGCAGCGTTTAATTAAATGACTAGGAACCGTCAACAGCAAAGCGTAATTCCTGGTTATACTCAAATAGAACTTTAGTTGCACGGAATTCCAAAAAGAATAATTGCACAATGCACATCAGAACAGCTGCAAAAGCAGTTCAAGACGTATCAGCATGTCTTCTTCACTGAGAGCTTGTTACCAGACCAAGCCCGTTTTAGTATTCTGCATAACACAGTAAGTGGCCCTCCCGTGAGGTCGCGgtgttcaaaatgaaaatgttctaaTTAATAAGACTGCCCAGAAAATGAGTCATGTGGGATCCTGACTCTGAAGGTCGGTGAACCGCTGCCTCGTTATGTCTTGGTGTTCTTAATGAATGAGTCACCACAGCAACAGCGGGAGAtgatcatttcagttttgtatcaGAACAGTCTAATACACGATTCTATTAGGTCATCAGTTGGCATCCTTAATGCGTCAGCCCTCACCAACCCGTCTTCAATGACCACCTCTGCTTTTTGTTGGTAGCATTCTGTTTACTTAAGCAATGGGAAGAAAGAGACCAACCCAGACCAAAGCTGCTCCGGTCAGGTGAGAGCCTGGTTTAAAACCTTCTGGGTACATCCTGCTCCTTAATAAGGAATGGGAAAAGGGATGTTTTGTTACAGACTTTGAGCTGTTTGGTTTTTTGaggaaaagaaaccaaacaaaacaaaacaagactcGGAACACCATAAACAAAATGAGTTAAAAAGGCAACGTCAAAATAAATTGACATGTAGCCTAACTGGTCTCAAATATGCTTTTTTCGGCTACAGTAACCGGGCACTATTTGAagggaggtttt

Function

GO:

id name namespace
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109817 True 2386 lncRNA 0.45 2 26798091 26800715

Neighbor

gene id symbol gene type direction distance location
AMCG00021716 NA coding downstream 142007 26643754 ~ 26656084 (-)
AMCG00021709 NA coding downstream 231153 26564206 ~ 26566938 (-)
AMCG00021710 NA coding downstream 325876 26440655 ~ 26472215 (-)
AMCG00021701 NA coding downstream 708105 26083778 ~ 26089986 (-)
AMCG00021698 elmo1,LOC106570440,LOC106515744,LOC107702083 coding downstream 741234 26025398 ~ 26056857 (-)
AMCG00021724 csk21,LOC105902032,LOC105022821,LOC107589440,LOC107693292,LOC107559708,LOC105910791,LOC107670008 coding upstream 4325 26805040 ~ 26824298 (-)
AMCG00021725 NA coding upstream 145457 26946172 ~ 26946690 (-)
AMCG00021731 brp16,LOC107589436 coding upstream 203766 27004481 ~ 27009904 (-)
AMCG00021732 NA coding upstream 253328 27054043 ~ 27064071 (-)
AMCG00021736 NA coding upstream 395377 27196092 ~ 27202305 (-)
G87884 NA non-coding downstream 360198 26432144 ~ 26437893 (-)
G87883 gabbr2 non-coding downstream 379192 26418680 ~ 26418899 (-)
G87882 NA non-coding downstream 402912 26394951 ~ 26395179 (-)
G87803 NA non-coding downstream 900050 25896958 ~ 25898041 (-)
G87800 NA non-coding downstream 912114 25885334 ~ 25885977 (-)
G87992 NA non-coding upstream 91761 26892476 ~ 26895336 (-)
G88095 NA non-coding upstream 608708 27409423 ~ 27409711 (-)
G88153 NA non-coding upstream 819105 27619820 ~ 27620091 (-)
G88154 NA non-coding upstream 826405 27627120 ~ 27631668 (-)
G88157 NA non-coding upstream 834189 27634904 ~ 27636720 (-)
AMCG00021719 ndrg1a other downstream 79583 26674078 ~ 26718508 (-)
G87871 NA other downstream 643716 26152105 ~ 26154375 (-)
AMCG00021700 NA other downstream 692700 26091227 ~ 26105391 (-)
G87806 NA other downstream 890086 25905444 ~ 25908005 (-)
G87674 NA other downstream 1391553 25403650 ~ 25406538 (-)
AMCG00021723 hsf1 other upstream 99248 26899963 ~ 26919844 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other upstream 1981087 28781802 ~ 28783281 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other upstream 2268486 29069201 ~ 29071760 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other upstream 2929362 29730077 ~ 29742808 (-)
G88527 NA other upstream 3536868 30337583 ~ 30424612 (-)

Expression


Co-expression Network