G87992


Basic Information

Item Value
gene id G87992
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26892476 ~ 26895336 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU109835
cagatcTAGGAGTTCAGTCACCTACGAGTTCACAAACAGTTCAGTCTGTAGATCATACAGAAGGTGGTGTTGATCCAGGCAGTACTGACTCTGCAGATTCCAACGGAAATGGTGGTCGCCAGAGTCCTGTATCACAGACAGTTTCCCCAGGGGATCAGACTGGCACCATCTCCCACACAAATTTGCCAAATGTTATGTTAGCTGGAACAGGTGCAGGAGATTTGCAGGGTACTGATCTTCACACACAAGTCATGGgAGGAGGCGATCAAAATGGTGTCATTTTCCATACAGACATCACAGCAGGTACAGGGGAAGGACACGGACTGAGCCAAAATACTGACTTGACAGGACATTTACACAGTTCAGTGTCACCAGATCCTGTTGGTAAGTAGCCGGAGATTAATTACCAGGTTTCATTCACTGCATGTATTGGTCTGAAGTACTGCATGATGTTTATTCTCCATTGTGTTTTGCTTCACATGTGTGTGATGCTTATTATCTCATCAGCAACTAGTTTAGCCTTAAATCAAGTTGAAACAGATTGTTGAACATATGACAGTTAAGCATTCTGCTGGTCAATACAGTCAATACTACTGGGCTCTactttttaagattatttttgtcTAAGCCATGCTGGAGAGCTGTTTAGTGAAAATAACCCAAAACTTTAtgagggtata
>TU109836
cagatcTAGGAGTTCAGTCACCTACGAGTTCACAAACAGTTCAGTCTGTAGATCATACAGGTGGTGTTGATCCAGGCAGTACTGACTCTGCAGATTCCAACGGAAATGGTGGTCGCCAGAGTCCTGTATCACAGACAGTTTCCCCAGATGTTATGTTAGCTGGAACAGGTGCAGGAGATTTGCAGGGTACTGATCTTCACACACAAGTCATGGgAGGAGGCGATCAAAATGGTGTCATTTTCCATACAGACATCACAGCAGGTACAGGGGAAGGACACGGACTGAGCCAAAATACTGACTTGACAGGACATTTACACAGTTCAGTGTCACCAGATCCTGTTGGTAAGTAGCCGGAGATTAATTACCAGGTTTCATTCACTGCATGTATTGGTCTGAAGTACTGCATGATGTTTATTCTCCATTGTGTTTTGCTTCACATGTGTGTGATGCTTATTATCTCATCAGCAACTAGTTTAGCCTTAAATCAAGTTGAAACAGATTGTTGAACATATGACAGTTAAGCATTCTGCTGGTCAATACAGTCAATACTACTGGGCTCTactttttaagattatttttgtcTAAGCCATGCTGGAGAGCTGTTTAGTGAAAATAACCCAAAACTTTAtgagggtata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109835 True 680 lncRNA 0.43 8 26892476 26895336
TU109836 False 638 lncRNA 0.42 7 26892476 26895336

Neighbor

gene id symbol gene type direction distance location
AMCG00021724 csk21,LOC105902032,LOC105022821,LOC107589440,LOC107693292,LOC107559708,LOC105910791,LOC107670008 coding downstream 68178 26805040 ~ 26824298 (-)
AMCG00021716 NA coding downstream 236392 26643754 ~ 26656084 (-)
AMCG00021709 NA coding downstream 325538 26564206 ~ 26566938 (-)
AMCG00021710 NA coding downstream 420261 26440655 ~ 26472215 (-)
AMCG00021701 NA coding downstream 802490 26083778 ~ 26089986 (-)
AMCG00021725 NA coding upstream 50836 26946172 ~ 26946690 (-)
AMCG00021731 brp16,LOC107589436 coding upstream 109145 27004481 ~ 27009904 (-)
AMCG00021732 NA coding upstream 158707 27054043 ~ 27064071 (-)
AMCG00021736 NA coding upstream 300756 27196092 ~ 27202305 (-)
AMCG00021735 LOC105904932,LOC108429636 coding upstream 341238 27236574 ~ 27261351 (-)
G87980 NA non-coding downstream 91761 26798091 ~ 26800715 (-)
G87884 NA non-coding downstream 454583 26432144 ~ 26437893 (-)
G87883 gabbr2 non-coding downstream 473577 26418680 ~ 26418899 (-)
G87882 NA non-coding downstream 497297 26394951 ~ 26395179 (-)
G87803 NA non-coding downstream 994435 25896958 ~ 25898041 (-)
G88095 NA non-coding upstream 514087 27409423 ~ 27409711 (-)
G88153 NA non-coding upstream 724484 27619820 ~ 27620091 (-)
G88154 NA non-coding upstream 731784 27627120 ~ 27631668 (-)
G88157 NA non-coding upstream 739568 27634904 ~ 27636720 (-)
G88190 NA non-coding upstream 1207994 28103330 ~ 28103666 (-)
AMCG00021719 ndrg1a other downstream 173968 26674078 ~ 26718508 (-)
G87871 NA other downstream 738101 26152105 ~ 26154375 (-)
AMCG00021700 NA other downstream 787085 26091227 ~ 26105391 (-)
G87806 NA other downstream 984471 25905444 ~ 25908005 (-)
G87674 NA other downstream 1485938 25403650 ~ 25406538 (-)
AMCG00021723 hsf1 other upstream 4627 26899963 ~ 26919844 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other upstream 1886466 28781802 ~ 28783281 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other upstream 2173865 29069201 ~ 29071760 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other upstream 2834741 29730077 ~ 29742808 (-)
G88527 NA other upstream 3442247 30337583 ~ 30424612 (-)

Expression


Co-expression Network