G88154


Basic Information

Item Value
gene id G88154
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27627120 ~ 27631668 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110026
TGTAATATACAGtcaggccaaaaaaaaaaaattaagtgaacTATATTAATATCAACTTCATAAAgtgatacattttcacattatgTTCTAACAGGGTTTACAGCATATTGGAGTTTTATAAGTgttaacaaaaggaaaaaatgtaaaatctatgCTCGCTTACACCTTACTTACAATAACAAGGATCTTTGCAGTGAATCTGCATGAAAATTAAAACGGCGAAAGACCTCACCGTAAAAGGAATGTCAGCAATTCATTTTGGCATGTGgcgaataatacaaaatatgtaatccATGGCTTGTGTTCAAAGGACATTGTGCAGTATGCCTGTCTGAATAGAAACTTTGGTCACTCATCCATGGTTTAATGAACAGAGTAGATGTACTATCCCAACACAGTTTTAAAGGGTATGATTTTGTGGAGGTAGATGGCTAAAGTTATGATTTCAATGGGTTTCCTAGCTGATGACTGTAATGCCTTCAAGTCTGTTAAGTGTAGCAAGATTTAAACGGCgcatttttgtacttttaaggCCCATCTGTGCTTCCATATCCCTTATAGAATTCTAAAGCTATTTAAGACAAAGGTGAGGTACAGGGAGTGGTTTATCTGGAGCAGGTACAGCCCTTCAGTGCCAATATTCAAGTTATCATCAGTTTTCAAGTCACATTGCTTGAAAAGGAAATGCTTGGCTAAAACATTCCACTTGACCTAATACATACACAATGCTGAAATCTCATGAAGTAACAATGCGTTCTAGCTAGGATAGCggctgatttttgttttacagcccAGTTAGATTTCCACAAATGACACTGTCTATCTACACACTTGTGGATGCCATTTGGCTAGGATCAATGAAGAAATGGTATTGAACTCTCCGATCAATAGGCTACTAGGAACAGACTGGGCACAATGCGTCAAATAGCCTCCTTAAACTATTAACCTCATCTTCTTTTCCAATAGTACTTAAGTTCTTTTATAGTTTCGATCTACAACAActggttcattttaaaatacagctctACACACAAGCATAAGTATTTAAGTTTACAGTTGTaccattaaaacattacaattttcCATCACATGAACTGCAATACATAAATCTAAAAGTTATGTTCAAGTTAAATAACATTTAGCCTAAGCAAAACTATACTTAGAAACACCAAATATACACCGGAATAATTTACagcatcaatattttattttacaaaaggcAGGTTTGGGCTACACTGTAACATTCTAGTCTAAAgagtttaaacattttgcattttgattacGGGGCACAAGTAGAAGAATAGCTTAAATGTGCCTCAATCAATTTTCAAAAGAAATTCACAAAGTGTACCAAGGGCTTTTAcaaaatttgaatttcaatgAAGAGTGCTTCACACATGCATGAAAGATCAAGTCAAAGGCAAGATGCACAGTGCCTTGTGAACATCAAGCATAACAATTCATGGGGGGAGGTCTTAATATGGAGGAGTAAGTCCACACAACtaagcagcaaaaaaaaaaaagaaagaaaaaaatcaaatgcagcATATTTCAGGCTTATGAGGTActtcatgtattttataaaatttcTCAAAAGTTACTGAATTTGATTTCTTTTAATTCCTTGTTAGCATAAAATACCTCGTCATCTTGAATTTTTATTTGCCCAGTTTATTAGGCAATCATGTAACTGCTTAGAAAGTGCAAAAAAATACTGATCGTTCTATGCAGCATATTCAAGGATGCATGATAATttcttaaatgtgtttgtgtgtattctcacacacaccaacacacactcatacacgcactttacatctctctctgtggcgccgtgaaaaacaaaaggataaCACCCATAAAAGCTAACAACTGGACAAATGCTTATACAGAAAGGCACACAAAATAAGGGATGTTTTCAGCCAAGGAGGCATGGATAACATACGATAACTGTTGAACAGTTCAGAAACTGCGCCAGAACAAGACATTTCCTGACAGACAAGCTTTGTACCTTCAAACTGAATAATAAGTCTCTTACATTATTGAAATAGAATATGCAGTCAGTATGTGTATTATAACAAAAtactttctaaaaataaaaaatataattcattcattatttgcctaataaaatgtagtacaaaaaaagcaaaatggtgCCATCACCAACTCTAACGGGGGAGTCGTAGAACTTCGGTTCACTGACACCGCTCAGAAAGCAAGATTAATGTTAGTGGCCAACTTACTATAAAAAGTAGCTTTGGTAAATTAATTAGGATGGGCTGCAGACAAAattctcaaaataaaaccatactattttaaaagaataaactaTAATAACTGGGGAGTATGAAGCATTTCAAATCATATTTCCAGCTTTCTTCACATCAGGAAACCAATCTTCTACTTATTTAAGTAGCTATAAAATGGAGATGACTTTAAAAGCTCACTGCTCTCATACCTCATTTAAATGAAGTAATTATTGCTCAGTTTTGCACAGCACTAAAGTAGGCTGTTTGGGGAAACAGACCCCCAATGCTTTTGCAGTAACAATCATGATAGGTGAGGTTCTTTCAGGTCTTAATTGCTCCCCCAAAGAGAGTTAATAAGTACTAAGAGAAAAAGCATTGTATCCATCCTATATGAAGTCCTATATGAAGCAGAGCATTTTCATTACCCtctatggggggaaaaaaaagaagatttAACTGAAAACCATCTTGCTTATTGCATACTACATTTTACAAAGGAggaaaaacaagatttaaaatgtatcatttatgGAGGCAAAAACCCTTTATACTTTTGTTTCCAATAACAAAATTGGTCCCCTGAACTCCTATGatacagatttattaaaacatccCTCAAAATAGTCCATAATCACCAATTACTTATAAAACATCAATTACAACAAGTTACATAGTATTGGCTGTTTGGTCACTAttggtcatttttattttttatgttaggGATTACAATTCTAGCACCCTACTTTCATTCTGAGGTAGATCCAgttggtttaaaaacacaaaaacaaaaaagccaggTTAACCCAAGGTTATTAATGCCTCAAGCAAAAATAGTACAACAtaaaaggtttgttttaatcttgCAAAGGTTTTGTTGTGCATCTTAAATTAAGTGACTATGGCATTGGTGGTTATGTTTAGAGCCCTAAAACACTTATCTGTGTTTTGCATGTTCAGGATTAAATATCTCTGGGTGTCATCCATTAAGGGAAAACATCTTGGCAAAAATGCAAACCACCAGAGGCTAGTACCGACTGCAGTGTCAGATGCACATGTTTTTAGGATCAAAGTTAGTTCAGTCAAGGTTTGAGAGAAAGCGGATGGATGCCACCAAGAACCAGCTAGGAGAGTTGACTGTCCAAGCAAGGAAGAGTGAGTAAAATCCTCCCTAAGCATACAGAACAAAAAGCTGTGAATAGAAACTCATTAGTAGATCATTCTTAAAGTATTTTAGGAAGGAATCCAATTCAACCAGAAGTGCCAGACTGAATAAAAAGagaccaagaaaaaaaacagaaaaaatccaaaacatttctgcagttcCCCAACAGTTGCACAAACACCACCACGTATTgggtatagaaaataaaaacttttccCTTCAATGACAGCTATATCATTGTGGGGAACACAGACATGGTTCATTTGCACATGTATtgtcaatacaaaaacaagttgaggaaacaaaaacaaaaacaaaaaactagaCAAGTGTCTAAAAATAACAGTCTGGTTCTAATGAGGCAGTGGGTACTACAAAAAAAGTTACACTTCACTGTTGTACATTTTACCTTACAAGAAGTACAGTATACTAACACGTTACtagaaagaaatggaaaagaaggagagaataaaaaaaaacttaaatctgTCCCATGATACCATTTGAGTTTCTTATTCAGTGCACATCTCAAAACAGCTGCAACCCCAGCTCCAAATCCCTCATTTATACAGTTAATCTTCAAAAATATGATTAACATCTTTCACGACAGGTAAAGTGATTTAGGATTTAATTATACACCAATATTTAAATGGCAATATCAAGCCATCAGGAAGAAACCCTCTTTATTCCACTTTTGCAAGCATCACAGTACACCTCAGGTATTGCATTCGGTCCAATGCCCATAAAGGACcaacagaataatttaaattttcatATGTTTAAACTTGATTGATGGCAATAtcctttgttcattttaaaagggtgcatcaaatacatttaacttcCTTGAGGTACAATATCAACATCACTGATAAAATGTATGATCTTACTTATATTCCTTTCAGGAGGTTGAGAAATTGAGAAGCCCATTGTGTTCCTCCTTTTATCCATGGGATAAATACAATATCCTCACAGACTTCTTGAATACAATTAACACAAACAAGGAAAGTGTGCACAGTTGCTTTCACAAGGTTACATTACTTCAGTGTGAAAAAGTATTGTAATGTGTAAgggcaataaaaataaatacatttatgacTGCGATATCAGTCACAATAGCTGTGATATTTTGAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110026 True 4549 lncRNA 0.35 1 27627120 27631668

Neighbor

gene id symbol gene type direction distance location
AMCG00021744 rplp1 coding downstream 39981 27584420 ~ 27587139 (-)
AMCG00021743 NA coding downstream 186858 27416270 ~ 27440262 (-)
AMCG00021738 cfap20 coding downstream 335124 27287252 ~ 27291996 (-)
AMCG00021735 LOC105904932,LOC108429636 coding downstream 365769 27236574 ~ 27261351 (-)
AMCG00021736 NA coding downstream 424815 27196092 ~ 27202305 (-)
AMCG00021747 NA coding upstream 6914 27638582 ~ 27640909 (-)
AMCG00021755 NA coding upstream 584154 28215822 ~ 28218715 (-)
AMCG00021756 NA coding upstream 602972 28234640 ~ 28239140 (-)
AMCG00021757 khdrbs3,LOC106521499,LOC106531515 coding upstream 954508 28586176 ~ 28591802 (-)
AMCG00021767 NA coding upstream 1411830 29043498 ~ 29047472 (-)
G88153 NA non-coding downstream 7029 27619820 ~ 27620091 (-)
G88095 NA non-coding downstream 217409 27409423 ~ 27409711 (-)
G87992 NA non-coding downstream 731784 26892476 ~ 26895336 (-)
G87980 NA non-coding downstream 826405 26798091 ~ 26800715 (-)
G87884 NA non-coding downstream 1189227 26432144 ~ 26437893 (-)
G88157 NA non-coding upstream 3236 27634904 ~ 27636720 (-)
G88190 NA non-coding upstream 471662 28103330 ~ 28103666 (-)
G88191 NA non-coding upstream 500898 28132566 ~ 28132863 (-)
G88201 NA non-coding upstream 635044 28266712 ~ 28267553 (-)
G88226 NA non-coding upstream 1066210 28697878 ~ 28698110 (-)
AMCG00021723 hsf1 other downstream 707276 26899963 ~ 26919844 (-)
AMCG00021719 ndrg1a other downstream 908612 26674078 ~ 26718508 (-)
G87871 NA other downstream 1472745 26152105 ~ 26154375 (-)
AMCG00021700 NA other downstream 1521729 26091227 ~ 26105391 (-)
G87806 NA other downstream 1719115 25905444 ~ 25908005 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other upstream 1150134 28781802 ~ 28783281 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other upstream 1437533 29069201 ~ 29071760 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other upstream 2098409 29730077 ~ 29742808 (-)
G88527 NA other upstream 2705915 30337583 ~ 30424612 (-)
AMCG00021820 NA other upstream 3246180 30877848 ~ 30888588 (-)

Expression


Co-expression Network