G88226


Basic Information

Item Value
gene id G88226
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 28697878 ~ 28698110 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110116
cagctgtgtaggaggaataaaactgggtgaggaacagccaaactcagctaacaaggtgaggttgctgaagacagtttactgtcaaaagtcaaacaccatggcaagactgagcacagcaacaagacacaaggtagttctactgcatcagcaaggtctctcccaggcagaaacttcaaggcagacaggggtttccagatgtgctgtccaagctcttttgaagaagcacaaagaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110116 True 233 lncRNA 0.47 1 28697878 28698110

Neighbor

gene id symbol gene type direction distance location
AMCG00021757 khdrbs3,LOC106521499,LOC106531515 coding downstream 106076 28586176 ~ 28591802 (-)
AMCG00021756 NA coding downstream 458738 28234640 ~ 28239140 (-)
AMCG00021755 NA coding downstream 479163 28215822 ~ 28218715 (-)
AMCG00021747 NA coding downstream 1056969 27638582 ~ 27640909 (-)
AMCG00021744 rplp1 coding downstream 1110739 27584420 ~ 27587139 (-)
AMCG00021767 NA coding upstream 345388 29043498 ~ 29047472 (-)
AMCG00021771 pqlc1 coding upstream 564342 29262452 ~ 29264433 (-)
AMCG00021770 txnl4a,txnl4a.S,txn4a,LOC107593623,LOC106570226 coding upstream 570304 29268414 ~ 29271589 (-)
AMCG00021774 NA coding upstream 574982 29273092 ~ 29275349 (-)
AMCG00021773 NA coding upstream 583446 29281556 ~ 29285963 (-)
G88201 NA non-coding downstream 430325 28266712 ~ 28267553 (-)
G88191 NA non-coding downstream 565015 28132566 ~ 28132863 (-)
G88190 NA non-coding downstream 594212 28103330 ~ 28103666 (-)
G88157 NA non-coding downstream 1061158 27634904 ~ 27636720 (-)
G88154 NA non-coding downstream 1066210 27627120 ~ 27631668 (-)
G88228 LOC107575789 non-coding upstream 63086 28761196 ~ 28761972 (-)
G88240 NA non-coding upstream 80183 28778293 ~ 28778685 (-)
G88241 NA non-coding upstream 81233 28779343 ~ 28779710 (-)
G88243 zfat,LOC107723386 non-coding upstream 87056 28785166 ~ 28785661 (-)
G88244 NA non-coding upstream 113653 28811763 ~ 28811965 (-)
AMCG00021723 hsf1 other downstream 1778034 26899963 ~ 26919844 (-)
AMCG00021719 ndrg1a other downstream 1979370 26674078 ~ 26718508 (-)
G87871 NA other downstream 2543503 26152105 ~ 26154375 (-)
AMCG00021700 NA other downstream 2592487 26091227 ~ 26105391 (-)
G87806 NA other downstream 2789873 25905444 ~ 25908005 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other upstream 83692 28781802 ~ 28783281 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other upstream 371091 29069201 ~ 29071760 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other upstream 1031967 29730077 ~ 29742808 (-)
G88527 NA other upstream 1639473 30337583 ~ 30424612 (-)
AMCG00021820 NA other upstream 2179738 30877848 ~ 30888588 (-)

Expression


Co-expression Network