G88240


Basic Information

Item Value
gene id G88240
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 28778293 ~ 28778685 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110130
agcaatttgagctacagtagctcgtctgttggatcggaccacacgggccagccttcgctccccacgtgcatcagtgagccttggccgcccatgaccctgtcgccggttcaccgcttttccttccttggaccacttttgataggtactgaccactgcagaccgggaacaccccacaagagctgcagttttggagatgctctgacccagtcgtctagccatcacaatttggcccttgtcaaagtcgctcagatccttacgcttgcccatttttcctgcttctaacacatcaactttggggacaaaatgttcacttgctgcctaatatatcccacccactgacaggtgccatgataacgagattatcagtgttattcacttcacctgtcagtggtc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110130 True 393 lncRNA 0.52 1 28778293 28778685

Neighbor

gene id symbol gene type direction distance location
AMCG00021757 khdrbs3,LOC106521499,LOC106531515 coding downstream 186491 28586176 ~ 28591802 (-)
AMCG00021756 NA coding downstream 539153 28234640 ~ 28239140 (-)
AMCG00021755 NA coding downstream 559578 28215822 ~ 28218715 (-)
AMCG00021747 NA coding downstream 1137384 27638582 ~ 27640909 (-)
AMCG00021744 rplp1 coding downstream 1191154 27584420 ~ 27587139 (-)
AMCG00021767 NA coding upstream 264813 29043498 ~ 29047472 (-)
AMCG00021771 pqlc1 coding upstream 483767 29262452 ~ 29264433 (-)
AMCG00021770 txnl4a,txnl4a.S,txn4a,LOC107593623,LOC106570226 coding upstream 489729 29268414 ~ 29271589 (-)
AMCG00021774 NA coding upstream 494407 29273092 ~ 29275349 (-)
AMCG00021773 NA coding upstream 502871 29281556 ~ 29285963 (-)
G88228 LOC107575789 non-coding downstream 16321 28761196 ~ 28761972 (-)
G88226 NA non-coding downstream 80183 28697878 ~ 28698110 (-)
G88201 NA non-coding downstream 510740 28266712 ~ 28267553 (-)
G88191 NA non-coding downstream 645430 28132566 ~ 28132863 (-)
G88190 NA non-coding downstream 674627 28103330 ~ 28103666 (-)
G88241 NA non-coding upstream 658 28779343 ~ 28779710 (-)
G88243 zfat,LOC107723386 non-coding upstream 6481 28785166 ~ 28785661 (-)
G88244 NA non-coding upstream 33078 28811763 ~ 28811965 (-)
G88245 NA non-coding upstream 51473 28830158 ~ 28831224 (-)
G88347 NA non-coding upstream 500676 29279361 ~ 29280873 (-)
AMCG00021723 hsf1 other downstream 1858449 26899963 ~ 26919844 (-)
AMCG00021719 ndrg1a other downstream 2059785 26674078 ~ 26718508 (-)
G87871 NA other downstream 2623918 26152105 ~ 26154375 (-)
AMCG00021700 NA other downstream 2672902 26091227 ~ 26105391 (-)
G87806 NA other downstream 2870288 25905444 ~ 25908005 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other upstream 3117 28781802 ~ 28783281 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other upstream 290516 29069201 ~ 29071760 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other upstream 951392 29730077 ~ 29742808 (-)
G88527 NA other upstream 1558898 30337583 ~ 30424612 (-)
AMCG00021820 NA other upstream 2099163 30877848 ~ 30888588 (-)

Expression


Co-expression Network