G88245


Basic Information

Item Value
gene id G88245
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 28830158 ~ 28831224 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110135
TTCAATACTGCCTCGAAACCTATAATATTCTGTAGCACATTGAGATCTTGCCTTTGCCAATATCaccaaatatgaaaataaagagtTGACAATAAggtgtaaatattttatagtgGTCTGCATGCTTTTTTTGTCAGAAAACACAATGTATACAAGATCTGATATTGACATCTGCCAGATTTGTCAGCTTGTGTTGGTATAAAGAGAaggtaattaataaataatacaaataaaaaaggttgCAAGTAAAACCTGTTTGCATTGAAAGGATGAAGAAAATAGAATTTACAAATTCAAGTCATTCaccttttggaaaaaaaaatatatcaagaaagaaaaagagaaaaactattgtgcatttttttgcatttaaaatataaaatataaacatgattCTACACAAAAATACCTggtttctaaaaagaaaaaaatatgcatttcttgACGTTTTGTATTGACATTTACTCGAACAGGAGTTTCCTTACATTCACAATCTGCACCAAATGTGTCACACTCAATATCCTTTCTGAGAATAGACCTAACTAGTTATAAATGGTCAAACAAAATCCAGTTGACCAAGATAATATGCACAAAAATCTCTCTTTGTCTTTAATAACTGGATGGCCAAATATTCATAGGAAATGTCTTCAAATATGCATCATACCGAGCCATATTCATCATAGTCAGGAGGCTGACAACAAGATATTTGGTTTTGGTCTTTAAACTCACTGAAAATCTGCCTcacaattatacttttaaaacacGTGAATTATTTCTTGCCAAGTCAATTAACTACGTATGCCTAAATAACACAGTCCCACGTTTGGTAGTCTTGCCATCTGCTATATCAGACAGTTTCCACTGTTTGCTCCTCTGCTTGTACAGCCTCCTGGACGTACACAATGAACTGGGAGGCATCTTCCCCTTGTGTGTACACCGTGACAGTCTCAATCCCTTCCACATCGTCAGAGGAGACAACGAGGTGATGCTCCTCCCCAAGGCCTACAGAAGCCTGTAATGCCTCTTGAATCATAACTGCGTTATTCCCTTGTTGTTCCTCTTCGGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110135 True 1067 lncRNA 0.35 1 28830158 28831224

Neighbor

gene id symbol gene type direction distance location
AMCG00021757 khdrbs3,LOC106521499,LOC106531515 coding downstream 238356 28586176 ~ 28591802 (-)
AMCG00021756 NA coding downstream 591018 28234640 ~ 28239140 (-)
AMCG00021755 NA coding downstream 611443 28215822 ~ 28218715 (-)
AMCG00021747 NA coding downstream 1189249 27638582 ~ 27640909 (-)
AMCG00021744 rplp1 coding downstream 1243019 27584420 ~ 27587139 (-)
AMCG00021767 NA coding upstream 212274 29043498 ~ 29047472 (-)
AMCG00021771 pqlc1 coding upstream 431228 29262452 ~ 29264433 (-)
AMCG00021770 txnl4a,txnl4a.S,txn4a,LOC107593623,LOC106570226 coding upstream 437190 29268414 ~ 29271589 (-)
AMCG00021774 NA coding upstream 441868 29273092 ~ 29275349 (-)
AMCG00021773 NA coding upstream 450332 29281556 ~ 29285963 (-)
G88244 NA non-coding downstream 18193 28811763 ~ 28811965 (-)
G88243 zfat,LOC107723386 non-coding downstream 44497 28785166 ~ 28785661 (-)
G88241 NA non-coding downstream 50448 28779343 ~ 28779710 (-)
G88240 NA non-coding downstream 51473 28778293 ~ 28778685 (-)
G88228 LOC107575789 non-coding downstream 68186 28761196 ~ 28761972 (-)
G88347 NA non-coding upstream 448137 29279361 ~ 29280873 (-)
G88434 NA non-coding upstream 1007294 29838518 ~ 29841539 (-)
G88435 NA non-coding upstream 1057221 29888445 ~ 29947540 (-)
G88545 NA non-coding upstream 1594080 30425304 ~ 30425552 (-)
G88562 NA non-coding upstream 1694522 30525746 ~ 30562800 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other downstream 46877 28781802 ~ 28783281 (-)
AMCG00021723 hsf1 other downstream 1910314 26899963 ~ 26919844 (-)
AMCG00021719 ndrg1a other downstream 2111650 26674078 ~ 26718508 (-)
G87871 NA other downstream 2675783 26152105 ~ 26154375 (-)
AMCG00021700 NA other downstream 2724767 26091227 ~ 26105391 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other upstream 237977 29069201 ~ 29071760 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other upstream 898853 29730077 ~ 29742808 (-)
G88527 NA other upstream 1506359 30337583 ~ 30424612 (-)
AMCG00021820 NA other upstream 2046624 30877848 ~ 30888588 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other upstream 2298359 31129583 ~ 31132185 (-)

Expression


Co-expression Network